Phyre 2 alignment of FER_CAPAN_1-144 with d1frda

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1frda_.6.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1frda_.6.alig.html;h=d0b438df2439b74a5daedfdf49c51c637161c712;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1frda_.6.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1frda_.6.alig.html new file mode 100644 index 0000000..d0b438d --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1frda_.6.alig.html @@ -0,0 +1,255 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1frda_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.95% Date Wed Jan 4 12:02:18 GMT 2017
Rank 6 Aligned Residues 96
% Identity 50% Template d1frda_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution 1.70
Model Dimensions (Å) X:33.805 Y:30.695 Z:29.295 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

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	48	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence	A	S	Y	K	V	K	L	I	T	P	D	G	.	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence	A	S	Y	Q	V	R	L	I	N	K	K	Q	D	I	D	T	T	I	E	I	D	E	E	T	T	I	L	D	G	A	E	E	N	G	I	E	L	P	F	S	C	H	S	G	S	C	S	S	C	V	G	K	V	V	E	G	E	V	D	Q
Template Known Secondary structure										T	T	T	T									T	T	S									T	T						S	S	S	S	S	S	S	S	T	T							S
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	D	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	D	Q	I	F	L	D	D	E	Q	M	G	K	G	F	A	L	L	C	V	T	Y	P	R	S	N	C	T	I	K	T	H	Q	E	P	Y	L	A
Template Known Secondary structure	T	T			S								T	T				G	G	G				S	S	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.