Phyre 2 alignment of FER_CAPAN_1-144 with d1fxia

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1fxia_.7.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1fxia_.7.alig.html;h=269bf2cd847e54cdcb8db04c120ae68545e57a4a;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1fxia_.7.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1fxia_.7.alig.html new file mode 100644 index 0000000..269bf2c --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1fxia_.7.alig.html @@ -0,0 +1,249 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1fxia_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.95% Date Wed Jan 4 12:02:18 GMT 2017
Rank 7 Aligned Residues 95
% Identity 62% Template d1fxia_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution 2.20
Model Dimensions (Å) X:28.561 Y:35.846 Z:27.677 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	S	Y	K	V	K	L	I	T	P	D	G	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	S	Y	K	V	T	L	K	T	P	D	G	D	N	V	I	T	V	P	D	D	E	Y	I	L	D	V	A	E	E	E	G	L	D	L	P	Y	S	C	R	A	G	A	C	S	T	C	A	G	K	L	V	S	G	P	A	P	D	E	D
Template Known Secondary structure										T	T									T	T	S										T						S	S	S	S	S	S	S	S	T	T							S	S			B		S
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	S	F	L	D	D	D	Q	I	Q	A	G	Y	I	L	T	C	V	A	Y	P	T	G	D	C	V	I	E	T	H	K	E	E	A	L
Template Known Secondary structure	S	S		S	S	T	T		T	T	T	T				G	G	G		B			S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.