Phyre 2 alignment of FER_CAPAN_1-144 with d1jq4a

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1jq4a_.18.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1jq4a_.18.alig.html;h=9f9bfac9456121f66f0d8103214a0c9b9e08c04a;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1jq4a_.18.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1jq4a_.18.alig.html new file mode 100644 index 0000000..9f9bfac --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1jq4a_.18.alig.html @@ -0,0 +1,258 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1jq4a_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.89% Date Wed Jan 4 12:02:18 GMT 2017
Rank 18 Aligned Residues 92
% Identity 29% Template d1jq4a_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin domains from multidomain proteins +
Resolution UNK
Model Dimensions (Å) X:40.099 Y:35.639 Z:28.523 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	47	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence	M	A	S	Y	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence	Q	R	V	H	T	I	T	A	V	T	E	D	G	E	S	L	R	F	E	C	R	S	D	E	D	V	I	T	A	A	L	R	Q	N	I	F	L	M	S	S	C	R	E	G	G	C	A	T	C	K	A	L	C	S	E	G	D	Y	D	L
Template Known Secondary structure											T	T	T									S			T									T						S			S	S							B
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.

	106	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence	T	D	G	N	.	.	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence	K	G	C	S	V	Q	A	L	P	P	E	E	E	E	E	G	L	V	L	L	C	R	T	Y	P	K	T	D	L	E	I	E	L	P	Y
Template Known Secondary structure			S		T	T	T	S										B		T	T	T			S	S			S					S
Template Predicted Secondary structure
Template SS confidence
	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.