Phyre 2 alignment of FER_CAPAN_1-144 with d1pfda

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1pfda_.5.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1pfda_.5.alig.html;h=a3a7c156bad8f764ffe01dc58ffee32bdddfc2e5;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1pfda_.5.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1pfda_.5.alig.html new file mode 100644 index 0000000..a3a7c15 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1pfda_.5.alig.html @@ -0,0 +1,249 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1pfda_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.95% Date Wed Jan 4 12:02:18 GMT 2017
Rank 5 Aligned Residues 96
% Identity 70% Template d1pfda_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution UNK
Model Dimensions (Å) X:34.879 Y:27.388 Z:26.519 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	S	Y	K	V	K	L	I	T	P	D	G	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	T	Y	N	V	K	L	I	T	P	D	G	E	V	E	F	K	C	D	D	D	V	Y	V	L	D	Q	A	E	E	E	G	I	D	I	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	V	V	S	G	S	I	D	Q	S	D
Template Known Secondary structure										T	T	T								T	T	S		T	T							T								S	S	S			S									S					T	T
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	S	F	L	D	D	E	Q	M	D	A	G	Y	V	L	T	C	H	A	Y	P	T	S	D	V	V	I	E	T	H	K	E	E	E	I	V
Template Known Secondary structure		S										T				S	S	S				S	S	S								G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.