Phyre 2 alignment of FER_CAPAN

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2bt6a1.37.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2bt6a1.37.alig.html;h=c4f9b397c6c18356fe571995e59002e9f11afaf5;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2bt6a1.37.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2bt6a1.37.alig.html new file mode 100644 index 0000000..c4f9b39 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2bt6a1.37.alig.html @@ -0,0 +1,276 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d2bt6a1 + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.56% Date Wed Jan 4 12:02:18 GMT 2017
Rank 37 Aligned Residues 89
% Identity 19% Template d2bt6a1
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution 1.50
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	49	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure												.																													.	.	.
Query SS confidence												.																													.	.	.
Query Sequence	S	Y	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	.	.	.	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D
Query Conservation												.																													.	.	.
Alig confidence												.																													.	.	.
Template Conservation
Template Sequence	K	I	T	V	H	F	I	N	R	D	G	E	T	L	T	T	K	G	K	I	G	D	S	L	L	D	V	V	V	Q	N	N	L	D	I	D	G	F	G	A	C	E	G	T	L	A	C	S	T	C	H	L	I	F	E	Q	H	I	F	E
Template Known Secondary structure									T	T	S									T	T		B								T	T				T	T	T	T	T	T	S	S	S	S	S		S	T	T										T
Template Predicted Secondary structure
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.

	105							.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.									.																			.	.	.
Query SS confidence		.	.	.	.	.	.									.																			.	.	.
Query Sequence	Q	.	.	.	.	.	.	T	D	G	N	F	L	D	D	.	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	.	.	.	V	T	I	E	T	H
Query Conservation		.	.	.	.	.	.									.																			.	.	.
Alig confidence		.	.	.	.	.	.									.																			.	.	.
Template Conservation
Template Sequence	K	L	E	A	I	T	D	E	E	N	D	M	L	D	L	A	Y	G	L	T	D	R	S	R	L	G	C	Q	I	C	L	T	K	A	M	D	N	M	T	V	R	V	P
Template Known Secondary structure	T	S												T	T		T	T			T	T				G	G	G		B			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.