Phyre 2 alignment of FER_CAPAN_1-144 with d2cjoa

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2cjoa_.13.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2cjoa_.13.alig.html;h=03e6a70ad93e3b1f8dd7983d77d6db53b90f5266;hb=c51dbe7933683b64548f5353e67561d2b5e377f7;hp=0000000000000000000000000000000000000000;hpb=12d4dfa00a5e93ae1de1d8409c6d5ca2bc8af13f;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2cjoa_.13.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2cjoa_.13.alig.html new file mode 100644 index 0000000..03e6a70 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2cjoa_.13.alig.html @@ -0,0 +1,252 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d2cjoa_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.94% Date Wed Jan 4 12:02:18 GMT 2017
Rank 13 Aligned Residues 95
% Identity 63% Template d2cjoa_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution UNK
Model Dimensions (Å) X:34.794 Y:32.985 Z:25.156 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	48	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence	A	S	Y	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence	A	T	Y	K	V	T	L	V	R	P	D	G	S	E	T	T	I	D	V	P	E	D	E	Y	I	L	D	V	A	E	E	Q	G	L	D	L	P	F	S	C	R	A	G	A	C	S	T	C	A	G	K	L	L	E	G	E	V	D	Q	S
Template Known Secondary structure										T	T	S									T	T	S										T						S	S	S	S	S	S			S	S												S
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	Q	S	F	L	D	D	D	Q	I	E	K	G	F	V	L	T	C	V	A	Y	P	R	S	D	C	K	I	L	T	N	Q	E	E	E	L
Template Known Secondary structure	S		S	S									T				G	G	G											S			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.