X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fpaematrices.html;h=43f059f917bf9c66db1c0b8bba0eb0e3c4c1b85e;hb=88446805fceab891ff2f229415a4744851d09c13;hp=8d180ee9780443022c9929477ccc7638ff9565b6;hpb=8e181c9e8080fd02cc2eedc375c8bdb2a4c176c3;p=jalview.git diff --git a/help/help/html/features/paematrices.html b/help/help/html/features/paematrices.html index 8d180ee..43f059f 100644 --- a/help/help/html/features/paematrices.html +++ b/help/help/html/features/paematrices.html @@ -44,7 +44,7 @@ at EBI-AlphaFoldDB).
@@ -81,8 +81,23 @@ Reference Annotation' entry in the Sequence ID submenu, or select all sequences and locate the option in the Selection submenu. You can do this in any alignment window (or view) where a sequence with - associated PAE data appears.
+ associated PAE data appears. +Adjusting the height of PAE matrix annotations
+PAE annotations behave in the same way as Jalview's line graph and histogram tracks. Click+dragging up and down with the left (select) mouse button held down will increase or decrease the height of the annotation. You can also hold down SHIFT whilst doing this to adjust the height of all PAE rows at once. +
++ PAE matrix annotation rows behave like any other sequence associated annotation, with the following additional features: +
++ +
Support for visualision and analysis of predicted alignment error matrices was added in Jalview 2.11.3.