X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fpreferences.html;h=6708c574950545dc011fde48c71bf8748cc18f96;hb=1d5d33f827ff7759334f39fcc6b0d7389c0cb4b4;hp=25d59bf72e556f3bccfb98356049e2268a2e2ed5;hpb=5cf3dc7c13f7139743b3cbe4e58551cc129debdc;p=jalview.git diff --git a/help/help/html/features/preferences.html b/help/help/html/features/preferences.html index 25d59bf..6708c57 100755 --- a/help/help/html/features/preferences.html +++ b/help/help/html/features/preferences.html @@ -213,11 +213,6 @@ structure information read from PDB will be processed and annotation added to associated sequences.

- Use RNAView for secondary structure - if selected, the - pyRNA RNAView service (https://github.com/fjossinet/PyRNA) - will be called to derive secondary structure information for RNA - chains. -

Add secondary structure annotation to alignment - if selected, Jmol's implementation DSSP will be used to add annotation to polypeptide @@ -228,7 +223,7 @@ the backbone atoms in the PDB file will be extracted as annotation lines shown on the alignment.
Since 2.11.2, scores from the Temperature Column for structures imported via the 3D-Beacons network may be shown instead as model quality or reliability scores.

- Default structure viewer - choose Jmol, CHIMERA, CHIMERAX or PYMOL for + Default structure viewer - choose Jmol, CHIMERA, CHIMERAX or PYMOL for viewing 3D structures.

Path to Chimera/X/Pymol program - Optional, as Jalview will search