X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=089873937ec1ea6d14dd73b09eb1630a600c2422;hb=8f149d9613754f066b0aced1b4fdcd7169fa7e05;hp=5d3a3837a1db5863baa276f75b8a6047b7ddcab4;hpb=ef915732552933bb67aaf40559e071826f9e3e52;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 5d3a383..0898739 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,11 +57,84 @@ li:before {
+ 2.11.1.1
- 11/08/2020 |
+ 17/09/2020
-
-
Shift+arrow keys navigate to next gap or
residue in cursor mode
@@ -92,7 +165,7 @@ li:before {
EMBL flat file
-
- Improved warning messages, debug logging
+ Improved warning messages, debug logging
and fixed Retry action when Jalview encounters errors when
saving or making backup files.
@@ -116,12 +189,18 @@ li:before {
-
Improved built-in documentation and command
line help for configuring Jalview's memory
-
+
|
-
+ Conservation and Quality tracks are shown
+ but not calculated and no protein or DNA score models are
+ available for tree/PCA calculation when launched with
+ Turkish language locale
+
+ -
Escape does not clear highlights on the
alignment (Since Jalview 2.10.3)
@@ -130,6 +209,10 @@ li:before {
doesn't slide selected sequences, just sequence under cursor
-
+ Alt+Up/Down in cursor mode doesn't move
+ sequence under the cursor
+
+ -
Peptide-to-CDS tracking broken when
multiple EMBL gene products shown for a single contig
@@ -155,6 +238,42 @@ li:before {
Single quotes not displayed correctly in
internationalised text for some messages and log output
+ -
+ Find doesn't report matches that span
+ hidden gapped columns
+
+ -
+ Resolved memory leaks in Tree and PCA
+ panels, Alignment viewport and annotation renderer.
+
+ -
+ Jalview ignores file format parameter
+ specifying output format when exporting an alignment via the
+ command line
+
+ -
+ Windows 10: For a minority of users, if
+ backups are not enabled, Jalview sometimes fails to
+ overwrite an existing file and raises a warning dialog. (in
+ 2.11.0, and 2.11.1.0, the workaround is to try to save the
+ file again, and if that fails, delete the original file and
+ save in place.)
+
+ -
+ Cannot process alignments from HTTPS urls
+ via command line
+
+ -
+ References to http://www.jalview.org in
+ program and documentation
+
+ Launching Jalview
+
+ -
+ Jalview application fails when launched the
+ first time for a version that has different jars to the
+ previous launched version.
+
Developing Jalview
-
@@ -162,18 +281,40 @@ li:before {
data, causing cloverReport gradle task to fail with an
OutOfMemory error.
+ -
+ Migrated the Jalview Version Checker to
+ monitor the release channel
+
New Known defects
-
+ CDS shown in result of submitting proteins
+ in a CDS/Protein alignment to a web service is wrong when
+ proteins share a common transcript sequence (e.g.
+ genome of RNA viruses)
+
+ -
+ Co-located features exported and re-imported
+ are ordered differently when shown on alignment and in
+ tooltips. (Also affects v2.11.1.0)
+
+ -
+ Drag and drop of alignment file onto
+ alignment window when in a HiDPI scaled mode in Linux only
+ works for the top left quadrant of the alignment window
+
+ -
Stale build data in jalview standalone jar
builds (only affects 2.11.1.1 branch)
-
- Windows 10: For a minority of users, if
- backups are not enabled, Jalview sometimes fails to
- overwrite an existing file and raises a warning dialog.
- Workaround is to try to save the file again, and if that
- fails, delete the original file and save in place.
+ Sequence ID colourscheme not re-applied
+ when alignment view restored from project (since Jalview 2.11.0)
+
+ -
+ Duplicate CDS sequences are generated when
+ protein products for certain ENA records are repeatedly
+ shown via Calculate->Show Cross Refs
|