X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=7d9d7c97682c8b8c9d0360bc8078e749e0016a23;hb=2acfca153f47a42f2e2ba6db01acb1846d9d7848;hp=87a2f4b89fd8674e0f503d8d3c9ca77ac5a3b5c4;hpb=12334155115dd7bd3d54308270db847122c76bfe;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 87a2f4b..7d9d7c9 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -63,7 +63,32 @@ li:before {
-
+ Jalview Native Application and
+ Installers built with install4j (licensed to the Jalview open
+ source project) rather than InstallAnywhere
+
+ -
+ Jalview Launcher System to auto-configure memory
+ settings, receive over the air updates and launch specific
+ versions via (Three
+ Rings' GetDown)
+
+ -
+ File type associations for
+ formats supported by jalview (including .jvp project files)
+
+ -
+ Jalview launch files (.jvl) to pass command line
+ arguments and switch between different getdown channels
+
+ -
+ Backup files created when saving Jalview project
+ or alignment files
+
+
+ -
Annotate nucleotide alignments from VCF data files
+ - Version of HTSJDK shipped with Jalview updated to version 2.12.0
-
Alternative genetic code tables for
'Translate as cDNA'
@@ -71,6 +96,10 @@ li:before {
Update of Ensembl Rest Client to API v10.0
- Enhanced visualisation and analysis of Sequence Features
+ -
+ IntervalStoreJ (NCList
+ implementation that alows updates) used for Sequence Feature collections
+ -
-
Sequence features can be filtered and
shaded according to any associated attributes (e.g. variant
@@ -86,7 +115,7 @@ li:before {
details
-
- More efficient sequence feature render
+ More efficient sequence feature render
algorithm (Z-sort/transparency and filter aware)
-
@@ -95,10 +124,6 @@ li:before {
- -
- Backup files created when saving Jalview project
- or alignment files
-
- Principal Components Analysis Viewer
-
@@ -112,7 +137,7 @@ li:before {
incrementally
-
- PCA plot is depth cued
+ PCA plot is depth cued
@@ -122,7 +147,7 @@ li:before {
- Speed and Efficiency
-
- More efficient creation of selections and
+ More efficient creation of selections and
multiple groups when working with large alignments
-
@@ -183,13 +208,10 @@ li:before {
- - Java 11 Support
+
- Jalview Groovy Scripting Console updated to Groovy v2.5
+ - Java 11 Support (not yet on general release)
-
- Java 11 Native Desktop installer, standalone JAR
- and getdown release channels
-
- -
OSX GUI integrations for App menu's 'About' entry and
trapping CMD-Q
@@ -215,34 +237,21 @@ li:before {
Development and Release Processes
- -
- Jalview Native Application and
- Installers built with Install4j (licensed to the Jalview open
- source project) rather than InstallAnywhere
-
- -
- Jalview Launcher System to auto-configure memory
- settings, receive over the air updates and launch specific
- versions via (Three
- Rings' GetDown)
-
- -
- Build system migrated from Ant to Gradle
+
-
+ Build system migrated from Ant to Gradle
-
Eclipse project configuration managed with
gradle-eclipse
- -
+
-
Atlassian Bamboo continuous integration for
unattended Test Suite execution
-
Memory test suite to detect leaks in common
operations
- -
- IntervalStoreJ (NCList
- implementation that alows updates) used for Sequence Feature collections
- - More unit test coverage, and minor issues resolved.
+ - More unit test coverage, and minor issues resolved.
+ - Developer documentation migrated to markdown (with HTML rendering)
|
@@ -338,7 +347,7 @@ li:before {
Page Up in wrapped mode
- Finder doesn't skip hidden regions
+ Finder doesn't skip hidden regions
Finder searches in minimised alignments
@@ -394,6 +403,10 @@ li:before {
peptide sequence
+ Codon consensus incorrectly scaled when shown
+ without normalisation
+
+
Sequence Details report opens positioned to top
of report
@@ -416,10 +429,19 @@ li:before {
Inserting gap sequence via the Edit Sequence
dialog corrupts dataset sequence
+
+ Structure colours not updated when associated tree
+ repartitions the alignment view (Regression in 2.10.5)
+
+
New Known Defects
-
+ Codon consensus logo incorrectly scaled in gapped
+ regions of protein alignment.
+
+ -
Input Data menu entry is greyed out when PCA View
is restored from a Jalview 2.11 project
@@ -442,6 +464,13 @@ li:before {
not shown as thresholded features in 2.11. To workaround please
create a Score filter instead.
+ - Java 11 Specific defects
+
+ -
+ Jalview Properties file is not sorted alphabetically when saved
+
+
+
|