Notarized MacOS installer for compatibility with Big
@@ -152,11 +168,11 @@ li:before {
-
- |
+
-
@@ -1574,8 +1651,8 @@ li:before {
columns in annotation row
-
- Preferences panel's ID Width control is not
- honored in batch mode
+ Preferences panel's ID Width control is
+ not honored in batch mode
-
Linked sequence highlighting doesn't work
@@ -1591,9 +1668,9 @@ li:before {
with negative residue numbers or missing residues fails
-
- Exception when shading sequence with negative
- Temperature Factor values from annotated PDB files (e.g.
- as generated by CONSURF)
+ Exception when shading sequence with
+ negative Temperature Factor values from annotated PDB
+ files (e.g. as generated by CONSURF)
-
Uniprot 'sequence variant' features
@@ -1604,20 +1681,22 @@ li:before {
structure and/or overview windows are also shown
-
- Selecting columns from highlighted regions
- very slow for alignments with large numbers of sequences
+ Selecting columns from highlighted
+ regions very slow for alignments with large numbers of
+ sequences
-
Copy Consensus fails for group consensus
with 'StringIndexOutOfBounds'
-
- VAqua(4) provided as fallback Look and Feel for OSX
- platforms running Java 10
+ VAqua(4) provided as fallback Look and
+ Feel for OSX platforms running Java 10
-
Adding a structure to existing structure
- view appears to do nothing because the view is hidden behind the alignment view
+ view appears to do nothing because the view is hidden
+ behind the alignment view
Applet
@@ -1629,9 +1708,10 @@ li:before {
Batch Mode
- -
- Fixed ID width preference is not respected
-
+ -
+ Fixed ID width preference is not
+ respected
+
New Known Defects
@@ -1651,35 +1731,64 @@ li:before {
2.10.4 is to fail back to N&W mapping)
-
- Export Annotations from File Menu with CSV
- option gives blank output
+ Export Annotations from File Menu with
+ CSV option gives blank output
-
- |
+
|
- - Updated Certum Codesigning Certificate
- (Valid till 30th November 2018)
|
-
- Desktop
- - Only one structure is loaded when several sequences and structures are selected for viewing/superposing
- - Alignment doesn't appear to scroll vertically via trackpad and scrollwheel
- - Jalview hangs if up/down arrows pressed in cursor mode when cursor lies in hidden region at start of alignment
- - Helix annotation has 'notches' when scrolled into view if columns are hidden
- - Annotation column filter can be slow to reset (ie after hitting cancel) for large numbers of hidden columns
- - User preference for disabling inclusion of sequence limits when exporting as flat file has no effect
- - Reproducible cross-reference relationships when retrieving sequences from EnsemblGenomes
+ - Updated Certum Codesigning Certificate (Valid till
+ 30th November 2018)
-
- |
+
+
+ Desktop
+
+
+ -
+ Only one structure is loaded when
+ several sequences and structures are selected for
+ viewing/superposing
+
+ -
+ Alignment doesn't appear to scroll
+ vertically via trackpad and scrollwheel
+
+ -
+ Jalview hangs if up/down arrows pressed
+ in cursor mode when cursor lies in hidden region at
+ start of alignment
+
+ -
+ Helix annotation has 'notches' when
+ scrolled into view if columns are hidden
+
+ -
+ Annotation column filter can be slow to
+ reset (ie after hitting cancel) for large numbers of
+ hidden columns
+
+ -
+ User preference for disabling inclusion
+ of sequence limits when exporting as flat file has no
+ effect
+
+ -
+ Reproducible cross-reference
+ relationships when retrieving sequences from
+ EnsemblGenomes
+
+
+ |
@@ -1935,14 +2044,16 @@ li:before {
New features in Jalview Desktop
-
- Uniprot Sequence Fetcher now uses web API at uniprot.org
+ Uniprot Sequence Fetcher now uses web API
+ at uniprot.org
- - HTTPS used for all connections to ebi.ac.uk
+
-
+ HTTPS used for all connections to
+ ebi.ac.uk
|
-
- |
+ |
@@ -2411,9 +2522,9 @@ li:before {
recovered correctly from Jalview project file
- Feature colours in overview when first opened
- (automatically via preferences) are different to the main
- alignment panel
+ Feature colours in overview when first
+ opened (automatically via preferences) are different to
+ the main alignment panel
Data import/export
@@ -3289,7 +3400,7 @@ li:before {
column.
- Null Pointer Exception raised when
+ Null Pointer Exception raised when
pressing Add on an orphaned cut'n'paste window.
|