X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=f70d2bbb87ffb9d75dc80f06a405dcbbbfd16bdb;hb=962d3d49394b0f59253911b7313dcdddffb88a5c;hp=8cebf4f2d66e4e64fdafc96320b32ae5dc15fd88;hpb=8b0cf50a6cfbe40d485ec7d2fe63f3dd1f7225d6;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 8cebf4f..f70d2bb 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -162,8 +162,8 @@ li:before {
when in wrapped mode
- Can select columns by dragging left/right in
- annotations
+ Can select columns by dragging left/right in a graph or histogram
+ annotation
Help button on Uniprot and PDB search panels
@@ -177,9 +177,11 @@ li:before {
popup menu
- Sequence Details report opens positioned to top
- of report
-
+ Red line indicating tree-cut position not shown if no subgroups are created
+
+ Removed ability to configure length of search history by right-clicking search box
+
+
Java 11 Support
@@ -199,9 +201,19 @@ li:before {
DAS sequence retrieval and annotation
capabilities removed from the Jalview Desktop
+
+ Castor library for XML marshalling and
+ unmarshalling has been replaced by JAXB for Jalview projects
+ and XML based data retrieval clients
+ Disable VAMSAS menu in preparation for removal
Jalview Desktop no longer distributed via Java Web Start
-
- Development and Release Processes
+ Documentation
+
+ -
+ Added remarks about transparent rendering effects
+ not supported in EPS figure export
+
+
Development and Release Processes
-
Jalview Native Application and
@@ -222,18 +234,15 @@ li:before {
gradle-eclipse
-
- Atlassian Bamboo continuous integration server for
+ Atlassian Bamboo continuous integration for
unattended Test Suite execution
-
Memory test suite to detect leaks in common
operations
-
- IntervalStoreJ (new updatable NCList
- implementation) used for Sequence Feature collections
- -
- Castor library for XML marshalling and
- unmarshalling has been replaced by JAXB for Jalview projects
- and XML based data retrieval clients
+ IntervalStoreJ (NCList
+ implementation that alows updates) used for Sequence Feature collections
+ - More unit test coverage, and minor issues resolved.
@@ -242,7 +251,11 @@ li:before {
Timeouts when retrieving data from Ensembl
'View [Structure] Mappings' and structure superposition in Jmol fail on Windows
-
+
+ Blank error dialog is displayed when discovering
+ structures for sequences with lots of PDB structures
+
+
Text misaligned in EPS or SVG image export with monospaced font
Warning of 'Duplicate entry' when saving
@@ -277,7 +290,11 @@ li:before {
Nonpositional features lose feature group
on export as Jalview features file
-
+
+ 'Graduated colour' option not offered for
+ manually created features (where if feature score is Float.NaN)
+
+
Blank extra columns drawn or
printed when columns are hidden
@@ -326,6 +343,8 @@ li:before {
stop_gained variants not shown correctly on peptide sequence
+ Sequence Details report opens positioned to top of report
+
Help page can be opened twice
Editing
@@ -335,19 +354,25 @@ li:before {
sequence data at beginning or end of alignment added/removed
via 'Edit' sequence
- Delete/Cut selection doesn't relocate
+ Delete/Cut selection doesn't relocate
sequence features correctly when start of sequence is
removed (Known defect since 2.10)
-
- New Known Defects
+ New Known Defects
-
Input Data menu entry is greyed out when PCA View is restored from a Jalview 2.11 project
-
- Alignment panel height can be too small after 'New View'
- -
- Display is incorrect after removing gapped columns within hidden columns
-
+ Alignment panel height can be too small after 'New View'
+
+ Display is incorrect after removing gapped
+ columns within hidden columns
+
+
+ Rightmost selection is lost when mouse re-enters
+ window after dragging left to select columns to left of visible
+ region
+
+
|
@@ -555,7 +580,12 @@ li:before {
Improved performance when rendering lots
of features (particularly when transparency is disabled)
-
+
+ Experimental features in 2.10.2 for
+ exchange of Jalview features and Chimera attributes made
+ generally available
+
+
|