X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=bee83800ed3b864e674571b340fc0957b949793e;hb=6875edc608179e9710388439099542296f263c15;hp=f7df4c2f8d817bc32cd0933902df7d7ae57c2e7e;hpb=91e1a778afa1d0752d9d7ec6e1f2a9bf64b9fb09;p=jalview.git
diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
index f7df4c2..bee8380 100755
--- a/help/help/html/whatsNew.html
+++ b/help/help/html/whatsNew.html
@@ -24,48 +24,39 @@
- Jalview 2.11 - major and minor new features
+ Jalview 2.11.1.3
- Jalview 2.11 introduces support for loading VCF files, and new
- filters and shading models for sequence features. Under the hood,
- we've addressed many bugs, and also made some important changes in
- the way the Jalview desktop is installed and launched.
+ Jalview 2.11.1.3 is the third patch release in the 2.11.1
+ series. Critical bugs resolved in this release include:
- - VCF Support. Proteins and genomic contigs with
- chromosomal location annotation (such as protein coding genes
- retrieved from Ensembl) can be annotated with variants imported
- from a local VCF file.
- - The Jalview Launcher and Update System
- Jalview's new installation model means you'll only need to
- download and install Jalview once. After installation, Jalview
- will automatically keep itself up to date. The launcher also sets
- Jalview's memory automatically, so you'll never again have to
- manually configure Java's memory settings.
We are grateful to
- Install4J who provided us with a free license for their
- installation system, and Jalview's over the air update system is
- via Getdown.
+ - Find doesn't highlight all motif matches for a sequence.
+ - Mouse over highlighting, CDS reconstruction and problems
+ with virtual feature popups when working with linked CDS/Protein
+ alignments.
+ - Result of aligning protein sequences linked to CDS results
+ in incorrect CDS alignment.
+ - Jalview installer doesn't correctly install Jalview on
+ paths containing spaces.
- The full list of bugs fixed in this release can be found in the 2.11 Release Notes.
+ For the full release notes, see the Jalview 2.11.1.3
+ release notes.
- Jalview and Java 11, 13, and onwards
+ Known Issues
- Java 11 provides improved performance and better OS
- integration, so we now recommend users select our Java 11 Jalview
- distribution rather than the legacy Java 8 build.
- Known Issues - update for 211
- - OSX: The 'Open File' dialog for Jalview's Groovy Console
- appears with the title 'Save As', and attempting to select a file
- to load yields a FileNotFound exception.The workaround is to first
- clear the 'Untitled' filename before selecting the file you wish
- to load.
-
- - OSX: Links don't open when clicked on or via the Sequence
- or Alignment window popup menu.
- - OSX (Webstart): Jalview only displays old news feed items
+ - We've had reports from a small number of windows 10 users
+ who see a warning dialog pop up when Jalview tries to save a new
+ version of an existing file. If you are affected by this bug and
+ this latest version of Jalview doesn't fix it, please let us know!
+ - Co-located features exported and re-imported are ordered
+ differently when shown on alignment and in tooltips. (Also affects
+ v2.11.1.0)
+ - Drag and drop of alignment file onto alignment window when
+ in a HiDPI scaled mode in Linux only works for the top left
+ quadrant of the alignment window.