X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=d849aa21925ef290b1c7de5c335642e49dfa855d;hb=d08dd6439589ba0ed4b683301dffbd19d7d68c79;hp=00f94661de6105662b8c2458ffd24a3979c1d67f;hpb=8b0ad7a1cd2800549ccc31f90e8450445eb654c1;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index 00f9466..d849aa2 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,52 +24,72 @@

- Jalview 2.11.1.0 + Welcome to Jalview Version $$Version-Rel$$ !!
Please + take a look at the release + notes for this build. Read on for the highlights.

- Jalview 2.11.1.0 is the first minor release for the 2.11 series. - Along with a number of critical bug fixes and improvements it brings - new functionality for mapping sequence features between CDS and - Protein alignments. It is also the first release made under a new four - number versioning scheme, which will allow us to keep track of - patches and bug fixes. + Highlights in 2.11.2

-

- See the 2.11.1.0 - release notes for full details of bugs fixed and new known issues. + New features for working with 3D Structure
+ Jalview 2.11.2 features a number of new capabilities described + below. +

+ +

+ View predicted protein structures via 3D-Beacons
+ Jalview 2.11.2's Structure + Chooser includes a client for the 3D-Beacons Network. Launched in + 2021, the 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/) + provides a central point for the retrieval of predicted and observed + 3D structures for sequences in Uniprot, including homology models + from Swiss-model and deep learning based predictions from the EBI's + Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).

+

- JalviewJS News
With the release of Jalview 2.11.1.0, - the team are now focused on bringing JalviewJS to full production. - To follow our progress take a look at http://www.jalview.org/jalview-js/ - and follow updates on our new JalviewJS - Releases github repository. + Support for viewing structures with ChimeraX and + Pymol
Jalview's 3D structure viewer system has been + re-architected to allow easier integration of external structure + viewers, and takes advantage of the strucViz2 Chimera communications + library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329).

+ The Structures + Preferences tab provides new options allowing ChimeraX and + Pymol to be used for visualising external 3D structures. Jalview + 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2 + (incentive). For ChimeraX, we recommend using v1.3 or later.
Views + from all structure viewers are saved in Jalview Projects, allowing + them to be shared with others using Jalview 2.11.2 or later, + providing they have the same viewer installed and configured to be + used with Jalview.

+

Other highlights include:

+