X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=aa101301c212edbf47bb137dbc04508cb8d344bf;hb=2f4f1d8fb6878271b64f327bc58c895f458137af;hp=3c5b9c204322a35dcc040723cae86ef75638edaa;hpb=4cf0508ac56ebb01fbd51b547ea9f4a682ca97fb;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 3c5b9c2..aa10130 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -20,10 +20,14 @@
 <!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
 <toc version="1.0">
 <tocitem text="Jalview Documentation" target="home" expand="true" >
-	<tocitem text="What's new" target="new" expand="false"/>
+ <tocitem text="What's new" target="new" expand="true">
+ <tocitem text="Protein Disorder Prediction" target="disorder"/>
+   <tocitem text="Alignment Conservation Analysis" target="aacon"/>
+  <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
+  </tocitem>
   <tocitem text="Editing Alignments" target ="edit"/>	
   <tocitem text="Cursor Mode" target="cursor"/>
-	<tocitem text="Key Strokes" target="keys"/>
+  <tocitem text="Key Strokes" target="keys"/>
 	<tocitem text="Input / Output" target="io"/>
   	<tocitem text="Making Figures" target="export"/>
 	<tocitem text="Hidden Regions" target="hiddenRegions"/>
@@ -53,6 +57,7 @@
                 <tocitem text="Multiple Alignment Subjobs" target="msaservice"/>
             </tocitem>
           <tocitem text="Secondary Structure Prediction" target="jnet"/>
+          <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
           <tocitem text="Protein Disorder Prediction" target="disorder"/>
           <tocitem text="Alignment Conservation Analysis" target="aacon"/>
           <tocitem text="Multi-Harmony Alignment Analysis" target="shmrws"/>