X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2FabovePID.html;fp=help%2Fhtml%2FcolourSchemes%2FabovePID.html;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=8adacc9ab34d32083239fde7c76fa32525cc56a4;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git diff --git a/help/html/colourSchemes/abovePID.html b/help/html/colourSchemes/abovePID.html deleted file mode 100755 index 8adacc9..0000000 --- a/help/html/colourSchemes/abovePID.html +++ /dev/null @@ -1,44 +0,0 @@ - - - -Above PID Colours - - - - -

- Colouring above a percentage identity threshold -

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Selecting this option causes the colour scheme to be applied to - only those residues that occur in that column at least a certain - percentage of the time. For instance, selecting the threshold to be - 100 will only colour those columns with 100% identity, and selecting 50 will shade residues appearing in least 50% of the rows (or sequences) in each column.

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The percentage calculation may include or exclude gaps in the column, depending on the option selected for the consensus calculation.

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With a threshold of 0, colouring is unchanged.

- -