X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2FannotationColouring.html;h=4847e71f193194759eaa475c191db66919781f7e;hb=cf96462693b8944caaedf638a1a0099b339ccdb4;hp=3d40a3e82d4539532adf37225958f5594b1cb50b;hpb=7bc3c614b6d38f11d3f804d5dab2df8dd2bf7204;p=jalview.git

diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html
index 3d40a3e..4847e71 100755
--- a/help/html/colourSchemes/annotationColouring.html
+++ b/help/html/colourSchemes/annotationColouring.html
@@ -46,6 +46,15 @@
 		<em>Per-sequence associated annotation colouring was introduced
 				in Jalview 2.8</em>
 		</li>
+		<li>If the &quot;Use Original Colours&quot; box is selected, the
+			colouring scheme will use the colouring scheme present on the
+			alignment before the Annotation Colour Settings window was displayed.
+			<br /> <em><strong>Please Note:</strong> If no colour scheme was
+				applied previously, then the colours for lines and labels at each
+				position in the annotation row will be used, for secondary structure
+				symbols and graphs, this may be black by default, so your alignment
+				will be coloured black.</em>
+		</li>
 		<li>The colour scheme can display a colour gradient from a colour
 			representing the minimum value in the selected annotation to a colour
 			representing the maximum value in the selected annotation. Use the