X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;fp=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=5eacca90c620d9c7f1786a578153955931622b4e;hb=55fc8f004dac252b5b89ac91cf506e4844a6b1da;hp=5774306dde92b0f165c2a9716f3bc97589d4191e;hpb=2e77b309193604aed37d838e916ae6b454be3431;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index 5774306..5eacca9 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -21,22 +21,31 @@ --> User Defined Colours -

User Defined Colours

-

+

User Defined Colours

+

You may define any number of new colour schemes, each with a unique name.

- Each of the residues in a new colour scheme may be assigned a new user defined - colour.
-
- Click "Apply" or "OK" to set your new colours on the active - alignment window.

-

Click "Cancel" to undo your changes if you pressed the "Apply" - button.
-
- If you save your colour scheme with a unique name the colour scheme name will - be added to the "Colour" menu on each new alignment window.
+ Each of the residues in a colour scheme may be assigned any chosen colour.
+ Select one or more residues, then select the desired colour.
+ Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.
+ Note that the currently selected buttons are highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose distinct colours for upper and + lower case residue codes. +

+ Click Apply or OK to set your new colours on the active + alignment window.
+ Click Cancel to undo your changes if you pressed the Apply + button. +

+ If you save your colour scheme with a unique name, the colour scheme name will + be added to the Colour menu on each new alignment window.

Any saved colour schemes will be automatically loaded the next time you use - Jalview.

+ Jalview. +

+ Note: the screenshot shows the appearance when running Java version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour chooser is + currently supported (for reasons of available screen space). +