X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2FbioJsonFormat.html;fp=help%2Fhtml%2Ffeatures%2FbioJsonFormat.html;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=59b49365cfa4fb2d17a9843e53d7c58a70adcc7f;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git diff --git a/help/html/features/bioJsonFormat.html b/help/html/features/bioJsonFormat.html deleted file mode 100644 index 59b4936..0000000 --- a/help/html/features/bioJsonFormat.html +++ /dev/null @@ -1,82 +0,0 @@ - - - -BioJSON in Jalview - - -

- BioJSON support in Jalview -

-

BioJSON is a JavaScript Object Notation (JSON) specification - for the representation and exchange of multiple sequence alignment - data.

-

- Jalview 2.9 includes support for reading and writing BioJSON v1.0 - data directly, or embedded in HTML documents. It can also generate - HTML pages which employ the BioJS MSA - viewer for interactive display of BioJSON data. -

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- Finding out more about BioJSON -

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- The BioJSON specification is published at http://jalview.github.io/biojson/. -

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- Import of BioJSON data from HTML pages -

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When importing embedded data in an HTML document, Jalview - searches for a hidden (usually) input or div element named - "seqData":

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-    <div name="seqData" id="seqData" style="display: none;">#valid BioJSON data#</div>
-
- OR - 
-    <input type="hidden" id="seqData" name="seqData" value='#valid BioJSON data#'/>
-
-

Jalview can also import BioJSON data directly.

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- Jalview's Support for BioJSON v1.0 -

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BioJSON exports of an alignment view include the following - additional data:

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The following data are NOT currently preserved on export:

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