X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fjmol.html;fp=help%2Fhtml%2Ffeatures%2Fjmol.html;h=0cd6168475804038b778b44eb3e0c7a094bc131e;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=2f1019660d74b8127338e8b6beba1dc16fc676c6;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html index 2f10196..0cd6168 100644 --- a/help/html/features/jmol.html +++ b/help/html/features/jmol.html @@ -74,15 +74,18 @@ based structure superposition was added in Jalview 2.6
- Controls
The structure is by default
- rendered as a ribbon diagram. Moving the mouse over the structure
- brings up tooltips giving the residue name, PDB residue number and
- chain code, atom name and number
- ([RES]Num:Chain.AtomName#AtomNumber). If a mapping exists to a
- residue in any associated sequences, then this will be highlighted
- in each one's alignment window. The converse also occurs - moving
- the mouse over an associated residue in an alignment window
- highlights the associated atoms in the displayed structures.
+ Controls
The structure is by default rendered
+ as a ribbon diagram. Moving the mouse over the structure brings up
+ tooltips giving the residue name, PDB residue number and chain code,
+ atom name and number ([RES]Num:Chain.AtomName#AtomNumber). If a
+ mapping exists to a residue in any associated sequences, then this
+ will be highlighted in each one's alignment window. The converse
+ also occurs - moving the mouse over an associated residue in an
+ alignment window highlights the associated atoms in the displayed
+ structures. Press B or use
+ Select→Select Highlighted columns from any linked
+ alignment window to mark the columns highlighted after mousing over
+ the structure.
Selecting a residue highlights its associated sequence residue and alpha carbon location. Double clicking an atom allows distances