A particular view may focus on some specific aspect of an -alignment - for example, hiding all but the region of an alignment -containing a particular domain. Right-clicking a view's -tab opens the View Name dialog box, allowing it to be renamed to -something more meaningful.
-Viewing Multiple Views Simultaneously
-Multiple views of an alignment are, by default, gathered together -as tabs within a single alignment window. They can be viewed -simultanously by pressing X (or via "View→Expand") -to expand each view into its own linked alignment window. Expanded views -are gathered back into into a single tabbed alignment window by pressing -G, or by selecting "View→Gather"). -
-Hidden Sequence Representatives and Multiple -Views
-There are some unexpected interactions between hidden sequence -representatives and their display in multiple views. See the -corresponding entry in the documentation -for hidden regions.
-Structure and Analysis Viewers and Multiple -Views
-A tree calculated on a particular view, or loaded onto it, is by -default associated with just that view. However, the Tree Viewer's "View→Associate -leaves" submenu allows a tree's view association to be changed to -to any or all other views.
-The results of a PCA -calculation on a particular view may also be associated with other -views, using the PCA Viewer's "View→Associate -Nodes" submenu.
-PDB Structure Viewers -opened on a structure associated with a sequence in a particular view are now (as of Jalview 2.3) associated with the same sequence in all views. This means that when 'Colour by Sequence' is selected in the structure view, the colour will be updated to the colours given in the view with the current input focus. - +
+ A particular view may focus on some specific aspect of an alignment + - for example, hiding all but the region of an alignment containing + a particular domain. Right-clicking a view's tab + opens the View Name dialog box, allowing it to be renamed to + something more meaningful. +
++ Viewing Multiple Views Simultaneously +
++ Multiple views of an alignment are, by default, gathered together as + tabs within a single alignment window. They can be viewed + simultanously by pressing X (or via "View→Expand") + to expand each view into its own linked alignment window. Expanded + views are gathered back into a single tabbed alignment window by + pressing G, or by selecting "View→Gather". +
++ Hidden Sequence Representatives and Multiple Views +
++ There are some unexpected interactions between hidden sequence + representatives and their display in multiple views. See the + corresponding entry in the documentation + for hidden regions. +
++ Structure and Analysis Viewers and Multiple Views +
++ A tree calculated on a particular view, or loaded onto it, is by + default associated with just that view. However, the Tree Viewer's "View→Associate + leaves" submenu allows a tree's view association to be + changed to to any or all other views. +
++ The results of a PCA + calculation on a particular view may also be associated with other + views, using the PCA Viewer's "View→Associate + Nodes" submenu. +
++ PDB Structure Viewers opened on a structure + associated with a sequence in a particular view are now (as of + Jalview 2.3) associated with the same sequence in all views. This + means that when 'Colour by Sequence' is selected in the structure + view, the colour will be updated to the colours given in the view + with the current input focus. + -
Multiple Views were introduced in Jalview 2.2
++ Multiple Views were introduced in Jalview 2.2 +