X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fseqfetch.html;fp=help%2Fhtml%2Ffeatures%2Fseqfetch.html;h=44aa1c213a8f4f8c42c273b1c18d85855a74b4e8;hb=dde303bc73617ab4eb3e681e67cf899e6a971318;hp=04d3c1d49ebc910450caf59e351b77cbb2a12fdb;hpb=528c0f1815bc67b54618ad5b16c2162946974caf;p=jalview.git diff --git a/help/html/features/seqfetch.html b/help/html/features/seqfetch.html index 04d3c1d..44aa1c2 100755 --- a/help/html/features/seqfetch.html +++ b/help/html/features/seqfetch.html @@ -32,53 +32,55 @@ Institute, or, since Jalview 2.4, DAS servers capable of the sequence command (configured in DAS settings).
-The Sequence Fetcher can be opened via the - "File" menu on the main desktop in order to retrieve - sequences as a new alignment, or opened via the "File" - menu of an existing alignment to import additional sequences. There - may be a short delay when the sequence fetcher is first opened, - whilst Jalview compiles the list of available sequence datasources - from the currently defined DAS server registry.
+The Sequence Fetcher can be opened via the "File" + menu on the main desktop in order to retrieve sequences as a new + alignment, or opened via the "File" menu of an existing + alignment to import additional sequences. There may be a short delay + when the sequence fetcher is first opened, whilst Jalview compiles + the list of available sequence datasources from the currently + defined DAS server registry.
- Every time a new fetcher is opened, you will need to select the database you want to retrieve - sequences from the database chooser. + Every time a new fetcher is opened, you will need to select + the database you want to retrieve sequences from the database + chooser.
-The databases are shown as a tree, and ordered alphabetically; + alt="Database selection dialog for fetching sequences (introduced in Jalview 2.8)"> +
+ The databases are shown as a tree, and ordered alphabetically;
tooltips are shown if you mouse over some sources, explaining what
the database will retrieve. You can select one by using the up/down
arrow keys and hitting return, or by double clicking with the mouse.
-
If you have DAS sources enabled, then you may have several sources
- for the same type of sequence identifier, and these will be grouped
- together in a sub-branch branch labeled with the identifier.
Once you have selected a sequence database, its fetcher dialog will open. Jalview provides two types of dialog:
-Only retrieving part of a sequence