X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fsiftsmapping.html;h=c12d45bb11359d568c304a7fa222c537ef09cd01;hb=469c8fbe09f4e4c137f6255428116158bec823ac;hp=8913e4f173f0e0197074e2b5cae266ba96562e05;hpb=a9a8a71c1682f639552e9954e565042847513195;p=jalview.git

diff --git a/help/html/features/siftsmapping.html b/help/html/features/siftsmapping.html
index 8913e4f..c12d45b 100644
--- a/help/html/features/siftsmapping.html
+++ b/help/html/features/siftsmapping.html
@@ -1,4 +1,24 @@
 <!DOCTYPE html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
 <html>
 <head>
 <meta charset="UTF-8">
@@ -24,7 +44,8 @@
     will generate a mapping using the built-in Needleman and Wunsch
     global alignment algorithm. This is how sequence-structure mappings
     were created before version 2.10.</p>
-  <p><strong>Controlling and troubleshooting SIFTS mappings</strong> <br />
+  <p>
+    <strong>Controlling and troubleshooting SIFTS mappings</strong> <br />
     Configuration options controlling whether SIFTS mappings are used
     can be found in the <strong>Tools &rarr; Preferences &rarr;
       Structure tab</strong>, under 'Sequence &harr; Structure method'.<br /> <em>Note:</em>
@@ -37,11 +58,12 @@
     <strong>Multi-Chain Mappings</strong> <br />SIFTS gives Jalview the
     ability to display multi-chain mappings between UniProt sequences
     and PDB structure data. This is important when working with
-    multimeric proteins, when the biological assembly can contain several
-    structures for the same protein sequence. Multi-chain mapping allows
-    all residues in a structure to be located in the alignment, and
-    also, when shading the structure by sequence colours, enables
-    conservation patterns between oligomer interfaces to be explored.
+    multimeric proteins, when the biological assembly can contain
+    several structures for the same protein sequence. Multi-chain
+    mapping allows all residues in a structure to be located in the
+    alignment, and also, when shading the structure by sequence colours,
+    enables conservation patterns between oligomer interfaces to be
+    explored.
   </p>
   <p>To see this in action, Retrieve the UniProt sequence
     FER1_MAIZE, and then view one of its structures: 3B2F. Mousing over
@@ -53,16 +75,16 @@
     <Strong>Viewing Mapping Output</Strong> <br /> The mapping provided
     by the SIFTS record is accessible via <strong>File &rarr;
       View mapping</strong> menu of the structure viewers. The screenshot below
-    shows the mapping created between UniProt sequence FER1_MAIZE and proteins in PDB 3B2F, which reports that two chains
-    were mapped. The mapping method is also reported (highlighted with red border).
+    shows the mapping created between UniProt sequence FER1_MAIZE and
+    proteins in PDB 3B2F, which reports mappings for two chains. The
+    mapping method is also reported (highlighted with red border).
   <p>
 
     &emsp;<img src="sifts_mapping_output.png" align="left"
-      alt="SIFTS mapping output" />
-      <br/>
+      alt="SIFTS mapping output" /> <br />
   <p>
     <em>SIFTS Mapping integration was added in Jalview 2.10</em>
   </p>
 
 </body>
-</html>
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+</html>
