X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=94faed935127949cd7d9a2199361d7b1abdba96f;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=6a5ec9fd219b81ddf838acc3d9c7a748200ee8aa;hpb=2026a420963f094072607c0495b6369ba96e60c0;p=jalview.git

diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index 6a5ec9f..94faed9 100755
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -1,20 +1,21 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
 -->
 <head>
 <title>Alignment Window Menus</title>
@@ -287,9 +288,13 @@
 						<li><strong>Show Consensus Histogram<br> </strong><em>
 							Enable or disable the display of the histogram above the
 							consensus sequence.</em></li>
-						<li><strong>Show Consensus Profile<br> </strong><em> Enable
-							or disable the display of the sequence logo above the consensus
+						<li><strong>Show Consensus Logo<br> </strong><em> Enable
+							or disable the display of the Consensus Logo above the consensus
 							sequence.</em></li>
+						<li><strong>Normalise Consensus Logo<br>
+						</strong><em>When enabled, scales all logo stacks to the same height,
+								making it easier to compare symbol diversity in highly variable
+								regions.</em></li>
 						<li><strong>Group Conservation<br> </strong><em> When
 							ticked, display a conservation row for all groups (only available
 							for protein alignments).</em></li>
