|
+ |
+
+ General
+
+ - Improved memory usage: sparse arrays used for all consensus calculations
+
+
+ Application
+
+ - New replacement token for creating URLs just from database cross references. Users with custom links will receive a warning dialog asking them to update their preferences.
+ - Cancel button and escape listener on dialog warning user about disconnecting Jalview from a Chimera session
+ - Custom URL links for database cross-references are matched to database name regardless of case
+
+
+
+
+ Applet
+
+ Build and deployment
+
+ |
+
+
+ General
+
+ - Columns with more than one modal residue are not coloured or thresholded according to percent identity (first observed in Jalview 2.8.2)
+ - Threonine incorrectly reported as not hydrophobic
+ - Updates to documentation pages (above PID threshold, amino acid properties)
+ - Lower case residues in sequences are not reported as mapped to residues in a structure file in the View Mapping report
+
+ Application
+
+ - Custom URL links for specific database names without regular expressions also offer invalid links from Sequence ID
+ - Removing a single configured link in the URL links pane in Connections preferences doesn't actually update Jalview configuration
+ - CTRL-Click on a selected region to open the alignment area popup menu doesn't work on El-Capitan
+ - Jalview doesn't offer to associate mmCIF files with similarly named sequences if dropped onto the alignment
+ - Additional mappings are shown for PDB entries where more chains exist in the PDB accession than are reported in the SIFTS file
+
+
+
+
+ Applet
+
+ Build and deployment
+
+ - Failing/passing unit tests
+
+ New Known Issues
+
+ |
+
+