X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=0ca65c03d513072ad69410d8eb3ffb4a71ee85a5;hb=fb6e6ecaf1aa86750f84e833ff83471d3cbd526c;hp=2ebb6f01b8467695c9cf68d5de8c1461d459556c;hpb=c8a5e950de2892a1637ca720afdba3eefc62a718;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 2ebb6f0..0ca65c0 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -70,16 +70,71 @@ li:before {
|
-
- Structure Chooser controls to
- control superposition of multiple structures and open
- structures in existing views
+ Windows File Shortcuts can be dragged
+ onto the Jalview Desktop
+
+ -
+ Use HGVS nomenclature for variant
+ annotation retrieved from Uniprot
+
+
+ |
+
+
+
+ -
+ Cannot import features with multiple
+ variant elements
+
+ -
+ Clustal files with sequence positions in
+ right-hand column parsed correctly
+
+ -
+ Wrap view - export to SVG - IDs shown but
+ not alignment area in exported graphic
+
+ -
+ Annotation panel set too high when
+ annotation added to view
+
+ -
+ F2/Keyboard mode edits work when Overview
+ window has input focus
+
+ -
+ Drag URL from chrome, firefox, IE to
+ Jalview desktop on Windows doesn't open file
Dragging
+ the currently open URL and links from a page viewed in
+ Firefox or Chrome on Windows is now fully supported. If
+ you are using Edge, only links in the page can be
+ dragged, and with Internet Explorer, only the currently
+ open URL in the browser can be dropped onto Jalview.
+
+
+ |
+
+
+
+
+ |
+
+
+
+ -
+ New Structure Chooser control
+ for disabling automatic superposition of multiple
+ structures and open structures in existing views
-
Mouse cursor changes to indicate Sequence
@@ -96,7 +151,7 @@ li:before {
-
Improved performance when rendering lots
- of features
+ of features (particularly when transparency is disabled)
@@ -112,6 +167,25 @@ li:before {
overlapping alignment panel
+ Overview doesn't show end of unpadded
+ sequence as gaps
+
+
+ Cross-reference handling
+ improved: CDS not handled correctly if transcript has no
+ UTR
+
+
+ Secondary structure and temperature
+ factor annotation not added to sequence when local PDB
+ file associated with it by drag'n'drop or structure
+ chooser
+
+
+ Answering 'No' to PDB Autoassociate
+ dialog doesn't import PDB files dropped on an alignment
+
+
Linked scrolling via protein horizontal
scroll bar doesn't work for some CDS/Protein views
@@ -124,8 +198,8 @@ li:before {
columns in annotation row
- Preferences panel's ID Width control is
- honored in interactive and batch mode
+ Preferences panel's ID Width control is not
+ honored in batch mode
Linked sequence highlighting doesn't work
@@ -146,6 +220,14 @@ li:before {
as generated by CONSURF)
+ Uniprot 'sequence variant' features
+ tooltip doesn't include a text description of mutation
+
+
+ Invert displayed features very slow when
+ structure and/or overview windows are also shown
+
+
Selecting columns from highlighted regions
very slow for alignments with large numbers of sequences
@@ -154,11 +236,13 @@ li:before {
with 'StringIndexOutOfBounds'
- VAqua(4) (download
- here) provided as fallback Look and Feel for OSX
+ VAqua(4) provided as fallback Look and Feel for OSX
platforms running Java 10
+
+ Adding a structure to existing structure
+ view appears to do nothing because the view is hidden behind the alignment view
+
Applet
@@ -166,7 +250,12 @@ li:before {
Copy consensus sequence option in applet
should copy the group consensus when popup is opened on it
-
+
+ Batch Mode
+
+ -
+ Fixed ID width preference is not respected
+
New Known Defects
|