X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=0ca65c03d513072ad69410d8eb3ffb4a71ee85a5;hb=fb6e6ecaf1aa86750f84e833ff83471d3cbd526c;hp=df0fe3048c36fb677e4e7c762315d3a36aa643b4;hpb=bf638235dd847c4fe589d6b91a2a5fd6f2a7aee3;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index df0fe30..0ca65c0 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -70,16 +70,71 @@ li:before {
     <tr>
       <td width="60" nowrap>
         <div align="center">
-          <strong><a name="Jalview.2.10.4">2.10.4</a><br /> <em>1/05/2018</em></strong>
+          <strong><a name="Jalview.2.10.4b1">2.10.4b1</a><br />
+            <em>7/06/2018</em></strong>
         </div>
       </td>
       <td><div align="left">
           <em></em>
           <ul>
             <li>
-              <!-- JAL-1847 JAL-2944 -->Structure Chooser controls to
-              control superposition of multiple structures and open
-              structures in existing views
+              <!-- JAL-1460 -->Windows File Shortcuts can be dragged
+              onto the Jalview Desktop
+            </li>
+            <li>
+              <!-- JAL-2920 -->Use HGVS nomenclature for variant
+              annotation retrieved from Uniprot
+            </li>
+          </ul>
+        </div></td>
+      <td><div align="left">
+          <em></em>
+          <ul>
+            <li>
+              <!-- JAL-3017 -->Cannot import features with multiple
+              variant elements
+            </li>
+            <li>
+              <!-- JAL-2997 -->Clustal files with sequence positions in
+              right-hand column parsed correctly
+            </li>
+            <li>
+              <!-- JAL-2991 -->Wrap view - export to SVG - IDs shown but
+              not alignment area in exported graphic
+            </li>
+            <li>
+              <!-- JAL-2992 -->Annotation panel set too high when
+              annotation added to view
+            </li>
+            <li>
+              <!-- JAL-2993 -->F2/Keyboard mode edits work when Overview
+              window has input focus
+            </li>
+            <li>
+              <!-- JAL-1460 -->Drag URL from chrome, firefox, IE to
+              Jalview desktop on Windows doesn't open file<br /> <em>Dragging
+                the currently open URL and links from a page viewed in
+                Firefox or Chrome on Windows is now fully supported. If
+                you are using Edge, only links in the page can be
+                dragged, and with Internet Explorer, only the currently
+                open URL in the browser can be dropped onto Jalview.</em>
+            </li>
+          </ul>
+        </div></td>
+    </tr>
+    <tr>
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.10.4">2.10.4</a><br /> <em>10/05/2018</em></strong>
+        </div>
+      </td>
+      <td><div align="left">
+          <em></em>
+          <ul>
+            <li>
+              <!-- JAL-1847 JAL-2944 -->New Structure Chooser control
+              for disabling automatic superposition of multiple
+              structures and open structures in existing views
             </li>
             <li>
               <!-- JAL-984 -->Mouse cursor changes to indicate Sequence
@@ -96,7 +151,7 @@ li:before {
             </li>
             <li>
               <!-- JAL-2593 -->Improved performance when rendering lots
-              of features
+              of features (particularly when transparency is disabled)
             </li>
           </ul>
           </div>
@@ -104,10 +159,33 @@ li:before {
       <td><div align="left">
           <ul>
             <li>
+              <!-- JAL-2899 -->Structure and Overview aren't updated
+              when Colour By Annotation threshold slider is adjusted
+            </li>
+            <li>
               <!-- JAL-2778 -->Slow redraw when Overview panel shown
               overlapping alignment panel
             </li>
             <li>
+              <!--  JAL-2929 -->Overview doesn't show end of unpadded
+              sequence as gaps
+            </li>
+            <li>
+              <!-- JAL-2789, JAL-2893 -->Cross-reference handling
+              improved: CDS not handled correctly if transcript has no
+              UTR
+            </li>
+            <li>
+              <!-- JAL-2321 -->Secondary structure and temperature
+              factor annotation not added to sequence when local PDB
+              file associated with it by drag'n'drop or structure
+              chooser
+            </li>
+            <li>
+              <!--  JAL-2984 -->Answering 'No' to PDB Autoassociate
+              dialog doesn't import PDB files dropped on an alignment
+            </li>
+            <li>
               <!-- JAL-2666 -->Linked scrolling via protein horizontal
               scroll bar doesn't work for some CDS/Protein views
             </li>
@@ -120,8 +198,8 @@ li:before {
               columns in annotation row
             </li>
             <li>
-              <!-- JAL-2913 -->Preferences panel's ID Width control is
-              honored in interactive and batch mode
+              <!-- JAL-2913 -->Preferences panel's ID Width control is not
+              honored in batch mode
             </li>
             <li>
               <!-- JAL-2945 -->Linked sequence highlighting doesn't work
@@ -142,19 +220,29 @@ li:before {
               as generated by CONSURF)
             </li>
             <li>
+              <!-- JAL-2920 -->Uniprot 'sequence variant' features
+              tooltip doesn't include a text description of mutation
+            </li>
+            <li>
+              <!-- JAL-2922 -->Invert displayed features very slow when
+              structure and/or overview windows are also shown
+            </li>
+            <li>
               <!-- JAL-2954 -->Selecting columns from highlighted regions
               very slow for alignments with large numbers of sequences
             </li>
-            <li><!-- JAL-2925 -->Copy Consensus fails for group consensus with 'StringIndexOutOfBounds'</li>
-            <li><em>New Defects</em>
-            <ul>
-                <li>
-                  <!-- JAL-2946 -->'SIFTS Mapping Error' when viewing
-                  structures for protein subsequence (if 'Trim Retrieved
-                  Sequences' enabled) or Ensembl isoforms (Workaround in
-                  2.10.4 is to fail back to N&amp;W mapping)
-                </li>
-              </ul>
+            <li>
+              <!-- JAL-2925 -->Copy Consensus fails for group consensus
+              with 'StringIndexOutOfBounds'
+            </li>
+            <li>
+              <!-- JAL-2976 -->VAqua(4) provided as fallback Look and Feel for OSX
+              platforms running Java 10
+            </li>
+            <li>
+              <!-- JAL-2960 -->Adding a structure to existing structure
+              view appears to do nothing because the view is hidden behind the alignment view
+            </li>
           </ul>
           <em>Applet</em>
           <ul>
@@ -162,10 +250,33 @@ li:before {
               <!-- JAL-2926 -->Copy consensus sequence option in applet
               should copy the group consensus when popup is opened on it
             </li>
-
           </ul>
-          
-        </div></td>
+          <em>Batch Mode</em>
+          <ul>
+          <li>
+            <!-- JAL-2913 -->Fixed ID width preference is not respected
+          </li>
+          </ul>
+          <em>New Known Defects</em>
+          <ul>
+            <li>
+              <!-- JAL-2973 --> Exceptions occasionally raised when
+              editing a large alignment and overview is displayed
+            </li>
+            <li>
+              <!-- JAL-2974 -->'Overview updating' progress bar is shown
+              repeatedly after a series of edits even when the overview
+              is no longer reflecting updates
+            </li>
+            <li>
+              <!-- JAL-2946 -->'SIFTS Mapping Error' when viewing
+              structures for protein subsequence (if 'Trim Retrieved
+              Sequences' enabled) or Ensembl isoforms (Workaround in
+              2.10.4 is to fail back to N&amp;W mapping)
+            </li>
+          </ul>
+        </div>
+          </td>
     </tr>
     <tr>
       <td width="60" nowrap>