X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=3812056bb3ece1dfd26dc0fc2022be7fe44d0792;hb=5dd170e1f8135791b8e5e2670b095bbd6009d3a6;hp=c566aae2e099be8a95dcf21388354df8a60a92bd;hpb=b18564cbc54fd371132693fdc2a94b962c711655;p=jalview.git diff --git a/help/html/releases.html b/help/html/releases.html index c566aae..3812056 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -76,33 +76,69 @@ li:before {
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  • + Hidden sequence markers and representative + sequence bolding included when exporting alignment as EPS, + SVG, PNG or HTML. Display is configured via the + Format menu, or for command-line use via a jalview + properties file. +
  • +
  • + Ensembl client updated to Version 7 REST + API and sequence data now imported as JSON +
  • +
  • + Change in recommended way of starting + Jalview via a Java command line: add jars in lib directory + to CLASSPATH, rather than via the deprecated java.ext.dirs + property. +
  • + + Development + +
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  • + Corrupted display when switching to + wrapped mode when sequence panel's vertical scrollbar is + visible. +
  • +
  • + Alignment is black in exported EPS file + when sequences are selected in exported view. +
  • +
  • + Groups with different coloured borders + aren't rendered with correct colour. +
  • +
  • + Jalview could hang when importing certain + types of knotted RNA secondary structure +
  • +
  • + Sequence highlight and selection in + trimmed VARNA 2D structure is incorrect for sequences that + do not start at 1 +
  • +
  • + '.' inserted into RNA secondary structure + annotation when columns are inserted into an alignment, + and when exporting as Stockolm flatfile. +
  • +
  • + Jalview annotation rows containing upper + and lower-case 'E' and 'H' do not automatically get + treated as RNA secondary structure +
  • +