X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=84a1f8e27effbd0062ac42a0f7aaf7a43ef35300;hb=648e4d6232f149d6844a2a6b5c2613938a917f2f;hp=eac7a6bebe7b84f96f513aff8a89e15560fec13c;hpb=8503c3549766c47495f8babbc94959ed3d89576b;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index eac7a6b..84a1f8e 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -68,9 +68,128 @@ li:before {
+ |
+
+ |
+ |
+
+
+
+ -
+ Hidden sequence markers and representative
+ sequence bolding included when exporting alignment as EPS,
+ SVG, PNG or HTML. Display of these can be
+ configured via the Format menu or in batch mode with a
+ jalview properties file.
+
+ -
+ Corrupted display when switching to
+ wrapped mode when sequence panel's vertical scrollbar is
+ visible.
+
+ -
+ Alignment is black in exported EPS file
+ when sequences are selected in exported view.
+
+ -
+ Groups with different coloured borders
+ aren't rendered with correct colour.
+
+ -
+ Jalview could hang when importing certain
+ types of knotted RNA secondary structure
+
+ -
+ Sequence highlight and selection in
+ trimmed VARNA 2D structure is incorrect for sequences that
+ do not start at 1
+
+ -
+ '.' inserted into RNA secondary structure
+ annotation when columns are inserted into an alignment
+
+ -
+ '.' written into RNA secondary structure
+ annotation when writing out Stockholm format
+
+ -
+ Jalview annotation rows containing upper
+ and lower-case 'E' and 'H' do not automatically get
+ treated as RNA secondary structure
+
+
+ |
+
+
+ |
+
+ |
+
+
+
+ -
+ Use HGVS nomenclature for variant
+ annotation retrieved from Uniprot
+
+ -
+ Windows File Shortcuts can be dragged
+ onto the Jalview Desktop
+
+
+ |
+
+
+
+ -
+ Cannot import features with multiple
+ variant elements (blocks import of some Uniprot records)
+
+ -
+ Clustal files with sequence positions in
+ right-hand column parsed correctly
+
+ -
+ Wrap view - export to SVG - IDs shown but
+ not alignment area in exported graphic
+
+ -
+ F2/Keyboard mode edits work when Overview
+ window has input focus
+
+ -
+ Annotation panel set too high when
+ annotation added to view (Windows)
+
+ -
+ Jalview Desktop is slow to start up when
+ network connectivity is poor
+
+ -
+ Drag URL from chrome, firefox, IE to
+ Jalview desktop on Windows doesn't open file
Dragging
+ the currently open URL and links from a page viewed in
+ Firefox or Chrome on Windows is now fully supported. If
+ you are using Edge, only links in the page can be
+ dragged, and with Internet Explorer, only the currently
+ open URL in the browser can be dropped onto Jalview.
+
+
+ |
+
+
|
|
@@ -112,14 +231,23 @@ li:before {
overlapping alignment panel
- overview doesn't show end of unpadded
+ Overview doesn't show end of unpadded
sequence as gaps
- Cross-reference handling improved: CDS not handled correctly if transcript has no UTR
+ Cross-reference handling
+ improved: CDS not handled correctly if transcript has no
+ UTR
-
+ Secondary structure and temperature
+ factor annotation not added to sequence when local PDB
+ file associated with it by drag'n'drop or structure
+ chooser
+
+
+ Answering 'No' to PDB Autoassociate
+ dialog doesn't import PDB files dropped on an alignment
Linked scrolling via protein horizontal
@@ -134,8 +262,8 @@ li:before {
columns in annotation row
- Preferences panel's ID Width control is
- honored in interactive and batch mode
+ Preferences panel's ID Width control is not
+ honored in batch mode
Linked sequence highlighting doesn't work
@@ -156,6 +284,10 @@ li:before {
as generated by CONSURF)
+ Uniprot 'sequence variant' features
+ tooltip doesn't include a text description of mutation
+
+
Invert displayed features very slow when
structure and/or overview windows are also shown
@@ -168,9 +300,7 @@ li:before {
with 'StringIndexOutOfBounds'
- VAqua(4) (download
- here) provided as fallback Look and Feel for OSX
+ VAqua(4) provided as fallback Look and Feel for OSX
platforms running Java 10
|