X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=993fcd50737ddd23a69d7594308531d254efeda0;hb=576d2415673f37bb083d88e3c5702fb7d71d9b7b;hp=fa8b1e8e640ef1c8651c1d272d932e64786d93c7;hpb=978383b8a79ef78a9c13700c9061275a6988f84c;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index fa8b1e8..993fcd5 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -70,16 +70,16 @@ li:before {
|
-
- Structure Chooser controls to
- control superposition of multiple structures and open
- structures in existing views
+ New Structure Chooser control
+ for disabling automatic superposition of multiple
+ structures and open structures in existing views
-
Mouse cursor changes to indicate Sequence
@@ -94,16 +94,43 @@ li:before {
Improved performance for large alignments
and lots of hidden columns
+ -
+ Improved performance when rendering lots
+ of features (particularly when transparency is disabled)
+
|
-
+ Structure and Overview aren't updated
+ when Colour By Annotation threshold slider is adjusted
+
+ -
Slow redraw when Overview panel shown
overlapping alignment panel
-
+ Overview doesn't show end of unpadded
+ sequence as gaps
+
+ -
+ Cross-reference handling
+ improved: CDS not handled correctly if transcript has no
+ UTR
+
+ -
+ Secondary structure and temperature
+ factor annotation not added to sequence when local PDB
+ file associated with it by drag'n'drop or structure
+ chooser
+
+ -
+ Answering 'No' to PDB Autoassociate
+ dialog doesn't import PDB files dropped on an alignment
+
+ -
Linked scrolling via protein horizontal
scroll bar doesn't work for some CDS/Protein views
@@ -116,8 +143,46 @@ li:before {
columns in annotation row
-
- Preferences panel's ID Width control is
- honored in interactive and batch mode
+ Preferences panel's ID Width control is not
+ honored in batch mode
+
+ -
+ Linked sequence highlighting doesn't work
+ for structures added to existing Jmol view
+
+ -
+ 'View Mappings' includes duplicate
+ entries after importing project with multiple views
+
+ -
+ Viewing or annotating Uniprot
+ protein sequences via SIFTS from associated PDB entries
+ with negative residue numbers or missing residues fails
+
+ -
+ Exception when shading sequence with negative
+ Temperature Factor values from annotated PDB files (e.g.
+ as generated by CONSURF)
+
+ -
+ Invert displayed features very slow when
+ structure and/or overview windows are also shown
+
+ -
+ Selecting columns from highlighted regions
+ very slow for alignments with large numbers of sequences
+
+ -
+ Copy Consensus fails for group consensus
+ with 'StringIndexOutOfBounds'
+
+ -
+ VAqua(4) provided as fallback Look and Feel for OSX
+ platforms running Java 10
+
+ -
+ Adding a structure to existing structure
+ view appears to do nothing because the view is hidden behind the alignment view
Applet
@@ -126,9 +191,33 @@ li:before {
Copy consensus sequence option in applet
should copy the group consensus when popup is opened on it
-
- |
+ Batch Mode
+
+ -
+ Fixed ID width preference is not respected
+
+
+ New Known Defects
+
+ -
+ Exceptions occasionally raised when
+ editing a large alignment and overview is displayed
+
+ -
+ 'Overview updating' progress bar is shown
+ repeatedly after a series of edits even when the overview
+ is no longer reflecting updates
+
+ -
+ 'SIFTS Mapping Error' when viewing
+ structures for protein subsequence (if 'Trim Retrieved
+ Sequences' enabled) or Ensembl isoforms (Workaround in
+ 2.10.4 is to fail back to N&W mapping)
+
+
+
+
|