X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=b8854f37748eb6cbd05100265d8a5d2e88334794;hb=739e52dd5387687cce4831eaafa24116dcaddcb9;hp=0192c70c383404338f38e1f48fa94292004e0ee5;hpb=91d4b1d51f21a72c9e3cfa8532e795272851bca1;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 0192c70..b8854f3 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,7 +47,7 @@
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General
@@ -64,8 +64,7 @@
-
-
+ - Uniprot Sequence fetcher Free Text Search dialog
- UniProt - PDB protein structure mappings with the EMBL-EBI PDBe SIFTS database
- Updated download sites used for Rfam and Pfam sources to xfam.org
- Disabled Rfam(Full) in the sequence fetcher
@@ -73,6 +72,7 @@
- Support for reverse-complement coding regions in ENA and EMBL
- Upgrade to EMBL XML 1.2 for ENA record retrieval
- Support for ENA CDS records with reverse complement operator
+ - Update to groovy-2.4.6-indy - for faster groovy script execution
- New 'execute Groovy script' option in an alignment window's Calculate menu
- Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
- Support for creating new alignment calculation workers from groovy scripts
@@ -81,6 +81,9 @@
- Double click on an entry in Jalview's database chooser opens a sequence fetcher
- Free-text search client for UniProt using the UniProt REST API
- -nonews command line parameter to prevent the news reader opening
+ - Displayed columns for PDBe and Uniprot querying stored in preferences
+ - Pagination for displaying PDBe and Uniprot search results
+ - Tooltips shown on database chooser
Applet
@@ -108,7 +111,10 @@
Extend selection with columns containing feature not working
Pfam format writer puts extra space at beginning of sequence
Incomplete sequence extracted from pdb entry 3a6s
- Cannot create groups on an alignment from from a tree when t-coffee scores are shown
+ Cannot create groups on an alignment from from a tree when t-coffee scores are shown
+ Cannot import and view PDB structures with chains containing negative resnums (4q4h)
+ ArithmeticExceptions raised when parsing some structures
+ 'Empty' alignment blocks added to Clustal, PIR and PileUp output
Application
@@ -124,7 +130,15 @@
Cannot save/restore representative sequence from project when only one sequence is represented
Disabled 'Best Uniprot Coverage' option in Structure Chooser
Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel
- View mapping in structure view shows mappings between sequence and all chains in a PDB file
+ View mapping in structure view shows mappings between sequence and all chains in a PDB file
+ PDB and Uniprot FTS dialogs format columns correctly, don't display array data, sort columns according to type
+ Export complete shown after destination file chooser is cancelled during an image export
+ Error when querying PDB Service with sequence name containing special characters
+ Manual PDB structure querying should be case insensitive
+ Large tooltips with broken HTML formatting don't wrap
+ Figures exported from wrapped view are truncated so L looks like I in consensus annotation
+
+
Applet
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