X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=bf8dc304888f15cb9ec8f54f4e5d1d4d4f9faaa4;hb=ecdffdf0f1f8aad4f0f5433051a8d82019f9e234;hp=2096f6f590fece361df1fa6c6b119de16c9e0012;hpb=fd20059368432141b6cfe42fd3aa993a260c011b;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 2096f6f..bf8dc30 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -67,19 +67,96 @@ li:before {
+ |
+
+ |
+
+ |
+
+ |
+
+
+ |
+
+ |
+
+
+
+ -
+ Use HGVS nomenclature for variant
+ annotation retrieved from Uniprot
+
+ -
+ Windows File Shortcuts can be dragged
+ onto the Jalview Desktop
+
+
+ |
+
+
+
+ -
+ Cannot import features with multiple
+ variant elements (blocks import of some Uniprot records)
+
+ -
+ Clustal files with sequence positions in
+ right-hand column parsed correctly
+
+ -
+ Wrap view - export to SVG - IDs shown but
+ not alignment area in exported graphic
+
+ -
+ F2/Keyboard mode edits work when Overview
+ window has input focus
+
+ -
+ Annotation panel set too high when
+ annotation added to view (Windows)
+
+ -
+ Jalview Desktop is slow to start up when network connectivity is poor
+
+ -
+ Drag URL from chrome, firefox, IE to
+ Jalview desktop on Windows doesn't open file
Dragging
+ the currently open URL and links from a page viewed in
+ Firefox or Chrome on Windows is now fully supported. If
+ you are using Edge, only links in the page can be
+ dragged, and with Internet Explorer, only the currently
+ open URL in the browser can be dropped onto Jalview.
+
+
+ |
+
|
|
-
- Structure Chooser controls to
- control superposition of multiple structures and open
- structures in existing views
+ New Structure Chooser control
+ for disabling automatic superposition of multiple
+ structures and open structures in existing views
-
Mouse cursor changes to indicate Sequence
@@ -96,7 +173,7 @@ li:before {
-
Improved performance when rendering lots
- of features
+ of features (particularly when transparency is disabled)
@@ -112,6 +189,25 @@ li:before {
overlapping alignment panel
+ Overview doesn't show end of unpadded
+ sequence as gaps
+
+
+ Cross-reference handling
+ improved: CDS not handled correctly if transcript has no
+ UTR
+
+
+ Secondary structure and temperature
+ factor annotation not added to sequence when local PDB
+ file associated with it by drag'n'drop or structure
+ chooser
+
+
+ Answering 'No' to PDB Autoassociate
+ dialog doesn't import PDB files dropped on an alignment
+
+
Linked scrolling via protein horizontal
scroll bar doesn't work for some CDS/Protein views
@@ -124,8 +220,8 @@ li:before {
columns in annotation row
- Preferences panel's ID Width control is
- honored in interactive and batch mode
+ Preferences panel's ID Width control is not
+ honored in batch mode
Linked sequence highlighting doesn't work
@@ -146,6 +242,14 @@ li:before {
as generated by CONSURF)
+ Uniprot 'sequence variant' features
+ tooltip doesn't include a text description of mutation
+
+
+ Invert displayed features very slow when
+ structure and/or overview windows are also shown
+
+
Selecting columns from highlighted regions
very slow for alignments with large numbers of sequences
@@ -154,9 +258,7 @@ li:before {
with 'StringIndexOutOfBounds'
- VAqua(4) (download
- here) provided as fallback Look and Feel for OSX
+ VAqua(4) provided as fallback Look and Feel for OSX
platforms running Java 10
@@ -170,7 +272,12 @@ li:before {
Copy consensus sequence option in applet
should copy the group consensus when popup is opened on it
-
+
+ Batch Mode
+
+ -
+ Fixed ID width preference is not respected
+
New Known Defects
|