X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2FRNAalifold.html;h=36e43aa42e2609b07060af99f1fb96974362b161;hb=dde303bc73617ab4eb3e681e67cf899e6a971318;hp=432e0a6f42a6e03f87ec89a8562ae7a1ec28e404;hpb=528c0f1815bc67b54618ad5b16c2162946974caf;p=jalview.git diff --git a/help/html/webServices/RNAalifold.html b/help/html/webServices/RNAalifold.html index 432e0a6..36e43aa 100644 --- a/help/html/webServices/RNAalifold.html +++ b/help/html/webServices/RNAalifold.html @@ -36,8 +36,7 @@ Gruber, and Peter F. Stadler, RNAalifold: Improved consensus structure prediction for RNA alignments (BMC Bioinformatics, 9:474, 2008). Download the paper at http://www.biomedcentral.com/1471-2105/9/474. + href="http://www.biomedcentral.com/1471-2105/9/474">http://www.biomedcentral.com/1471-2105/9/474.

Running RNAalifold from Jalview
@@ -54,8 +53,7 @@ RNAalifold prediction parameters
JABAWS and Jalview only provide access to a selection of the RNAalifold arguments. For a full description, see the documentation at http://www.tbi.univie.ac.at/RNA/RNAalifold.html. + href="http://www.tbi.univie.ac.at/RNA/RNAalifold.html">http://www.tbi.univie.ac.at/RNA/RNAalifold.html.

Supported Arguments which give alternate structures @@ -75,8 +73,7 @@ Calculate an MEA structure where the expected Accuracy is computed from the base pair probabilities. A more detailed description can be found in the RNAfold program documentation at http://www.tbi.univie.ac.at/RNA/RNAfold.html. + href="http://www.tbi.univie.ac.at/RNA/RNAfold.html">http://www.tbi.univie.ac.at/RNA/RNAfold.html.

Example RNAalifold Structure Annotation rows