X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fdbreffetcher.html;fp=help%2Fhtml%2FwebServices%2Fdbreffetcher.html;h=83c80badabd0f6dffb04db83b526132bbccd63f9;hb=7d67fb613ec026dc9a265e351e7fab542e3f1d61;hp=e919f3f356e92bd097c5da4d03556386136faf72;hpb=02e38bb826828ab2991584cf4b737c0138cb6c44;p=jalview.git diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html index e919f3f..83c80ba 100644 --- a/help/html/webServices/dbreffetcher.html +++ b/help/html/webServices/dbreffetcher.html @@ -25,13 +25,15 @@
Discovering Database References for Sequences
- Database references are associated with a sequence are displayed as a
- list in the tooltip shown when mousing over its sequence ID. Jalview
- uses references for the retrieval of PDB structures and DAS
- features, and for retrieving sequence cross-references such as the
- protein products of a DNA sequence.
+ Database references associated with a sequence are displayed as an
+ abbreviated list in the tooltip shown when mousing over its sequence
+ ID, and can be viewed in full via the
+ Sequence Details window. .
+ Jalview also uses references for the retrieval of
+ PDB structures and DAS features, and for
+ retrieving sequence cross-references such as the protein products of a
+ DNA sequence.
Initiating reference retrieval
The
@@ -64,13 +66,13 @@
The Sequence Identification Process
The
method of accession id discovery is derived from the method which
- earlier Jalview versions used for Uniprot sequence feature retrieval,
- and was originally restricted to the identification of valid Uniprot
+ earlier Jalview versions used for UniProt sequence feature retrieval,
+ and was originally restricted to the identification of valid UniProt
accessions.
Essentially, Jalview will try to retrieve records
from a subset of the databases accessible by the sequence fetcher using each sequence's ID string (or each string in
- the ID separated by the '∣' symbol).
+ href="../features/seqfetch.html">sequence fetcher using each
+ sequence's ID string (or each string in the ID separated by the
+ '∣' symbol).
If a record (or set of records) is retrieved by any query derived from the ID string of a sequence, then the sequence is aligned to the