X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=e42a4e6943e4d64f4c472fbb029800381f4cbef8;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=077ace642ce87a66c3f1df4e02133b26b69dcbdb;hpb=8677e6e34e291edc58c1da2fc9c958473754143f;p=jalview.git
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 077ace6..e42a4e6 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -96,9 +96,14 @@
Lupas_21, Lupas_14, Lupas_28
Coiled-coil
predictions for the sequence. These are binary predictions for
each location.
- JNETSOL25,JNETSOL5,JNETSOL0
Solvent
- accessibility predictions - binary predictions of 25%, 5% or 0%
- solvent accessibility.
+ Jnet Burial
Prediction of Solvent
+ Accessibility. levels are
+
+ - 0 - Exposed
+ - 3 - 25% or more S.A. accessible
+ - 6 - 5% or more S.A. accessible
+ - 9 - Buried (<5% exposed)
+
JNetPRED
The consensus prediction -
helices are marked as red tubes, and sheets as dark green
arrows.
@@ -112,13 +117,8 @@
JNetHMM
HMM profile based prediction -
helices are marked as red tubes, and sheets as dark green
arrows.
- jpred
Jpred prediction - helices are
- marked as red tubes, and sheets as dark green arrows.
JNETPSSM
PSSM based prediction - helices
are marked as red tubes, and sheets as dark green arrows.
- JNETFREQ
Amino Acid frequency based
- prediction - helices are marked as red tubes, and sheets as dark
- green arrows.
JNETJURY
A '*' in this annotation
indicates that the JNETJURY was invoked to rationalise
significantly different primary predictions.
@@ -129,8 +129,8 @@
href="../features/annotation.html#seqannots">Add reference
annotation Sequence ID popup menu option.
- As of Jalview 2.6, the JPred service accessed accessed via the
- 'Secondary structure prediction' submenu should be considered a
+ As of Jalview 2.6, the JPred service accessed accessed via
+ the 'Secondary structure prediction' submenu should be considered a
legacy Jalview SOAP service, and will be replaced in the near future
by a JPred4 Rest service.