X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmafft.html;h=e777fd4ff90bd7d8289f213d3f5f27600a14233a;hb=c53aeee9a688f68d64106a968876e542f701fbc6;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git diff --git a/help/html/webServices/mafft.html b/help/html/webServices/mafft.html index e18e273..e777fd4 100644 --- a/help/html/webServices/mafft.html +++ b/help/html/webServices/mafft.html @@ -16,3 +16,20 @@ * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . --> +MAFFT Multiple Sequence Alignments + +

MAFFT Multiple Sequence Alignments

+

Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version + 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids + Research, 33 511-518

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MAFFT is a program for the multiple alignment of nucleic acid or protein +sequences, and is available from the Web +Service→Alignment→MAFFT Multiple Sequence +Alignment entry in the web services menu.

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MAFFT utilizes algorithms for spectral correlation to identify +homologous regions in a fast-fourier transform representation of each +sequence. The Jalview web service runs MAFFT using the +'--auto' option which picks optimal parameters +for the set of sequences to be aligned.

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