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-
-
-
-Multiple Sequence Alignment Web Service
-
-
- Multiple Sequence Alignment Web Services
-
- Multiple sequence alignment services are accessed from the Alignment
- submenu of the Alignment Window's Web Service menu.
- When an entry from one of these menus is selected, either the
- currently selected residues, or the whole sequence set (if there is
- no selection or only one sequence is selected) will be submitted for
- multiple sequence alignment.
-
- There are two kinds of multiple sequence alignment operations
- available:
-
- - alignment - where a new alignment is constructed
- from the input
- - realignment - where any aligned sequences will be
- used by the service to construct a profile based alignment of the
- remaining unaligned sequences
-
- JABAWS Alignment services
-
Most alignment services are provided by the
- JABAWS framework, which allows you to
- customise the precise parameters used when running each alignment
- program. In addition to the 'Default settings', you may choose from a
- range of alignment preset settings, or create your own using the
- 'Edit Settings And Run ..' dialog
- box.
-
-
- Alignment programs supported by JABAWS.
Versions
- shown are those bundled with JABAWS 2.2 - if you are using a
- different server, check its home page to find out which versions are
- provided.
-
-
-
-
- Multiple Alignments of Sequences with hidden
- columns
Multiple alignment services are 'column
- separable' analysis operations. If the input contains hidden columns then
- each visible segment of the input sequence set will be submitted for
- alignment separately, and the results concatenated (with the hidden
- regions preserved) once all alignment functions have completed. Each
- sub-job's state is reported in its own tab:
-
-
- Multiple Multiple Sequence Alignment sub jobs
- running at once
-
-
-
- 
-
-
-
-