X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Furllinks.html;fp=help%2Fhtml%2FwebServices%2Furllinks.html;h=36c7c6bb5377efaa4e63cc5e76b413cba6988a94;hb=38fbc3735711f0914fe0c96767371ba386186411;hp=1a1f0d047678b6d16dfe9ebc5e0f49e5c550eec0;hpb=89bb7d4307e261c88387e811b4225d322d527a18;p=jalview.git

diff --git a/help/html/webServices/urllinks.html b/help/html/webServices/urllinks.html
index 1a1f0d0..36c7c6b 100644
--- a/help/html/webServices/urllinks.html
+++ b/help/html/webServices/urllinks.html
@@ -66,6 +66,12 @@
     the sequence ID for the sequence (<em>since Jalview 2.10.1</em>).
   </p>
   <p>
+  If Jalview opens a project with links which include $SEQUENCE_ID$ tokens, it will present
+  the user with a warning message, as these links may need to be updated to use $DB_ACCESSION$, if
+  they were added before Jalview 2.10.1. The message lists the links which should be reviewed. 
+  The warning can be turned off completely via a checkbox in the message dialog.
+  </p>
+  <p>
     <strong>Regular Expression Substitution</strong><br> A url may
     contain a string of the form $SEQUENCE_ID=/<em>regular
     expression</em>/=$ or $DB_ACCESSION=/<em>regular expression</em>/=$.