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-What's new ?
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- Jalview 2.11 - major and minor new features
-
- Jalview 2.11 introduces support for loading VCF files, and new
- filters and shading models for sequence features. Under the hood,
- we've addressed many bugs, and also made some important changes in
- the way the Jalview desktop is installed and launched.
-
- - VCF Support. Proteins and genomic contigs with
- chromosomal location annotation (such as protein coding genes
- retrieved from Ensembl) can be annotated with variants imported
- from a local VCF file.
- - The Jalview Launcher and Update System
- Jalview's new installation model means you'll only need to
- download and install Jalview once. After installation, Jalview
- will automatically keep itself up to date. The launcher also sets
- Jalview's memory automatically, so you'll never again have to
- manually configure Java's memory settings.
We are grateful to
- Install4J who provided us with a free license for their
- installation system, and Jalview's over the air update system is
- via Getdown.
-
-
- The full list of bugs fixed in this release can be found in the 2.11 Release Notes.
-
-
- Jalview and Java 11, 13, and onwards
-
- Java 11 provides improved performance and better OS
- integration, so we now recommend users select our Java 11 Jalview
- distribution rather than the legacy Java 8 build.
- Known Issues - update for 211
-
- - OSX: The 'Open File' dialog for Jalview's Groovy Console
- appears with the title 'Save As', and attempting to select a file
- to load yields a FileNotFound exception.The workaround is to first
- clear the 'Untitled' filename before selecting the file you wish
- to load.
-
- - OSX: Links don't open when clicked on or via the Sequence
- or Alignment window popup menu.
- - OSX (Webstart): Jalview only displays old news feed items
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