X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;fp=help%2Fhtml%2FwhatsNew.html;h=60769a4cde71ced02fdb6679c244febcb213b7bc;hb=97f7dd4f753e4a95e4d58b2e3818004d353c02c3;hp=8a0436dd0e6c35df296aefaed837cf04b8ff0f65;hpb=3e405b886d52bde0205ea814962fe6cc80f59106;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 8a0436d..60769a4 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -32,15 +32,16 @@
highlights are below.
- - New UI, and faster and more configurable implementation for PCA, Neighbour-Joining and UPGMA Trees
+ - New UI, and faster and more configurable
+ implementation for PCA, Neighbour-Joining and UPGMA Trees
Menu entries for calculating PCA and different types of tree have
been replaced by a single Calculations dialog box. The
- underlying implementation for the PCA and tree calculations have been
- made faster and more memory efficient. A new framework has also been
- created for the score models used to calculate distances between
- sequences. This framework allows import of substitution matrices in
- NCBI and AAIndex format, and custom score models to be created via a
- groovy script.
+ underlying implementation for the PCA and tree calculations have
+ been made faster and more memory efficient. A new framework has
+ also been created for the score models used to calculate distances
+ between sequences. This framework allows import of substitution
+ matrices in NCBI and AAIndex format, and custom score models to be
+ created via a groovy script.
- Update to JABAWS 2.2
Jalview's
alignment, protein conservation analysis, and protein disorder and
RNA secondary structure prediction services are now provided by
+ Recent search histories for Find and the free
+ text search system (for querying Uniprot and the PDBe).
Experimental Features
@@ -80,5 +84,16 @@
the Chimera viewer's Chimera menu allow positional annotation to
be exchanged between Chimera and Jalview.
+
+ Scripting
New groovy examples
+ demonstrate Jalview 2.10.2 APIs for creation of data-driven
+ colourschemes, and custom alignment file handlers. The FeatureAnnotationWorker
+ introduced in Jalview 2.10 has also been refactored to allow
+ efficient counting across multiple feature types. Please be aware
+ that feature counter scripts created for earlier versions will not
+ execute in Jalview 2.10.2.
+