X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;fp=help%2Fhtml%2FwhatsNew.html;h=c5859eacb61600f8cbd52cec6104b7bf071affd5;hb=09b25d3dc80f74c0fae97e27fd394417917f3906;hp=d1d141d30b133f0a400e7fb369ebe9cce029c4d5;hpb=d8bf5506216e7a0726a1fa5baa6b4d244f035741;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
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- What's new in Jalview 2.10.1 ?
+ What's new in Jalview 2.10.2 ?
- Jalview 2.10.1 was released on 29th November 2016. Full details are
- in the Jalview 2.10.1
- Release Notes, but the highlights are below. This is also the
- first release to include contributions from Kira Mourão, who
- joined Jalview's core development team in October 2016.
-
+ Full details about Jalview 2.10.2 are in the
+ Release Notes, but the highlights are below.
- - More memory efficient
We've slimmed
- down the consensus analysis data structures used by Jalview so
- even wider alignments can be worked with.
- - Select highlighted region
Press 'B'
- or use the new menu option in the alignment window's Select menu
- to mark columns containing highlighted regions generated from
- structure selections, mouse-overs, or resulting from a Find
- operation.
- - New custom link mechanism for opening URLs
- for database cross references.
If you have customised URL
- links in your Jalview preferences, then you may already have seen
- the warning dialog (see below).
- - New command line export option for BioJS
- MSAviewer
A number of small bugs with the HTML export
- functions from the Jalview desktop were also fixed.
- - Small but significant changes to the
- physicochemical properties and consensus calculations
Threonine
- is no longer considered a non-hydrophobic residue in the protein
- conservation calculation, and minor bugs addressed in PID and
- consensus colouring.
- - Correct display of disulphide bond
- features
In linked structure views, Jalview would
- highlight all residues between in addition to the two linked
- cysteines. The 'select columns by feature' function in the feature
- settings would also select all intermediate columns.
-
- Warning dialog about updating
- your configured URL links
In the desktop prior to Jalview
- 2.10.1, the only way to configure custom links for a particular
- database cross-reference for a sequence was to give it a name that exactly
- matched the database source, and a regular expression for filtering
- out any spurious matches generated when the custom linked was tested
- against the Sequence's ID string. Since the introduction of the
- $DB_ACCESSION$ token, however, $SEQUENCE_ID$ will not be used for
- database cross-reference accession strings, and if you have custom
- links configured, Jalview will raise a warning message so let you
- know that you may need to update your links to use $DB_ACCESSION$.
-