What's new ?

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4dfc54e201bb54ba3074ac62ae61e29135f9e099;hb=0e575263043797b2e9bbd74386cd5851c09433af;hp=3ee853417fa61c56a24ae76c047d86536076d233;hpb=dbc8ffccfdd7ff6f028ef8496e168219bd49ec8a;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 3ee8534..4dfc54e 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,74 +1,57 @@ + --> What's new ? -

- What's new ?

- Jalview 2.8.1 includes new features for group creation, RNA secondary - structure prediction and a host bug fixes. It also includes support - for version 2.1 - of JABA and includes a Spanish translation of its user interface.
- The highlights are detailed below, and the full list is given in the Jalview 2.8.1 Release Notes. -

The Desktop and web based applet include new keystrokes for - defining and undefining groups, and PAM250 has been added to the range - of score models available for use by the tree and PCA calculations. - The Jalview project file format has also been extended for handling - RNA and protein secondary structure annotation, in anticipation for - new structure based secondary structure support in Jalview 2.8.2.

Internationalisation

Jalview 2.8.1 is the first release to include support for - displaying Jalview's user interface in different languages. In August - 2013, David Roldán-Martinez took on the task of - internationalising Jalview's user interface. He also recruited Sara - Hernández Díaz and Laura Ferrandis Martinez who created - Jalview's first spanish user interface translation.

- If you notice any problems, or would like to help translate Jalview's - user interface into other languages, head over to issues.jalview.org and put in a - feature request describing the translations you can provide to the i18n - component. David has also documented - the process of creating i18n translations to help you get started. -

RNA Secondary Structure Prediction with JABA 2.1

- This version of Jalview includes a client to access the new services available in JABA v2.1 , which - provides services for RNA consensus secondary structure prediction and - two new alignment programs (GLProbs and MSAProbs).

- To see how to perform RNA secondary structure predictions like the one below, take a look at the RNAAliFold - client documentation. -

The RNAalifold client was implemented by Jalview's 2013 - summer student, Dan Barton. -

+ What's new in Jalview 2.10.5 ? +

Jalview 2.10.5 is a minor release that includes critical + patches for users working with Ensembl, and RNA secondary structure + annotation.

EPS, PNG and SVG export now includes hidden sequence + markers, and representative sequences are marked in bold.
Ensembl Client updated for Ensembl Rest API v7.
The + latest Ensembl API is not backwards compatible with earlier + versions of Jalview, so if you require Ensembl functionality you + will need to install this release. +
Improved support for VIENNA extended dot-bracket notation + for RNA secondary structure
Positional and selected region highlighting in VARNA + 'trimmed sequence' view now more reliable

+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The majority of improvement in 2.10.5 are due to Jalview users + contacting us via the jalview-discuss email list. Thanks to everyone + who took the time to do this !

Jalview and Java 10

This release addresses a critical bug for OSX users who are + running Jalview with Java 10 which can prevent files being saved + correctly through the 'Save As' dialog box. The 'Save As' dialog for + Jalview's Groovy Console remains affected - we hope to address this + in the next major release.