X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4dfc54e201bb54ba3074ac62ae61e29135f9e099;hb=0e575263043797b2e9bbd74386cd5851c09433af;hp=d908cda70785ed4636a6911d805974d54883a93c;hpb=5b05749cab04092671551fbbcdc80406b53da7d0;p=jalview.git
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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
What's new ?
-What's new ?
-Jalview 2.6 introduces new web services, and includes an updated
-version of the Jmol molecular graphics visualization system. See the release history for the full
-details.
-Highlights in Jalview Version 2.6
-
- - JABA Web Services for
- multiple alignment using:
-
- - ClustalW
- - MAFFT
- - Muscle
- - ProbCons
- - T-COFFEE
-
-
- - User modifiable alignment service parameters
- - Visualization of superposed structures associated with protein
- or nucleotide sequence alignments.
- - Export coordinates and projection as CSV from PCA viewer
-
-
-Issues Resolved (a select list - see release history for details)
-
- - clustalx colourscheme colours Ds preferentially when both D+E
- are present in over 50% of the column
- - Prevent sequence fetcher from replacing ',' for ';' when querying DAS sequence sources
- - InstallAnywhere builds fail to launch on OS X java 10.5 update
- 4 (due to apple Java 1.6 update)
-
-See the Release History page for
-details of all new features and resolved issues.
+
+ What's new in Jalview 2.10.5 ?
+
+ Jalview 2.10.5 is a minor release that includes critical
+ patches for users working with Ensembl, and RNA secondary structure
+ annotation.
+
+ - EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.
+ - Ensembl Client updated for Ensembl Rest API v7.
The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.
+
+ - Improved support for VIENNA extended dot-bracket notation
+ for RNA secondary structure
+ - Positional and selected region highlighting in VARNA
+ 'trimmed sequence' view now more reliable
+
+
+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The majority of improvement in 2.10.5 are due to Jalview users
+ contacting us via the jalview-discuss email list. Thanks to everyone
+ who took the time to do this !
+ Jalview and Java 10
+ This release addresses a critical bug for OSX users who are
+ running Jalview with Java 10 which can prevent files being saved
+ correctly through the 'Save As' dialog box. The 'Save As' dialog for
+ Jalview's Groovy Console remains affected - we hope to address this
+ in the next major release.