X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4dfc54e201bb54ba3074ac62ae61e29135f9e099;hb=0e575263043797b2e9bbd74386cd5851c09433af;hp=e8b9c968e681dfb9370e5db239c6bd73833930d8;hpb=947ae75e0aab2336bfead4d4f303d028d0eb58ca;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index e8b9c96..4dfc54e 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -24,38 +24,34 @@
- What's new in Jalview 2.10.1 ?
-
-
- Jalview 2.10.1 was released on 24th November 2016. Full details are
- in the Jalview 2.10.1
- Release Notes, but the highlights are below. This is also the
- first release to include contributions from Kira Mourão, who
- joined Jalview's core development team in October 2016.
+ What's new in Jalview 2.10.5 ?
+ Jalview 2.10.5 is a minor release that includes critical
+ patches for users working with Ensembl, and RNA secondary structure
+ annotation.
- - More memory efficient
We've slimmed
- down the consensus analysis data structures used by Jalview so
- even wider alignments can be worked with.
- - Select highlighted region
Press 'B'
- or use the new menu option in the alignment window's Select menu
- to mark columns containing highlighted regions generated from
- structure selections, mouse-overs, or resulting from a
- Find operation.
- - New custom link mechanism for opening URLs
- for database cross references.
If you have customised URL
- links in your Jalview preferences, then you may already have seen
- the Update your links
- warning dialog.
- - New command line export option for BioJS
- MSAviewer
A number of small bugs with the HTML export
- functions from the Jalview desktop were also fixed.
- - Small but significant changes to the
- physicochemical properties and consensus calculations
Threonine
- is no longer considered a non-hydrophobic residue in the protein
- conservation calculation, and minor bugs addressed in PID and
- consensus colouring.
+ - EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.
+ - Ensembl Client updated for Ensembl Rest API v7.
The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.
+
+ - Improved support for VIENNA extended dot-bracket notation
+ for RNA secondary structure
+ - Positional and selected region highlighting in VARNA
+ 'trimmed sequence' view now more reliable
-
+
+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The majority of improvement in 2.10.5 are due to Jalview users
+ contacting us via the jalview-discuss email list. Thanks to everyone
+ who took the time to do this !
+ Jalview and Java 10
+ This release addresses a critical bug for OSX users who are
+ running Jalview with Java 10 which can prevent files being saved
+ correctly through the 'Save As' dialog box. The 'Save As' dialog for
+ Jalview's Groovy Console remains affected - we hope to address this
+ in the next major release.