X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=d1d141d30b133f0a400e7fb369ebe9cce029c4d5;hb=898cc5eb4089b2dcf8605e5e2c33387879cd3389;hp=b099c3b142e676a55f94a5e7b02980c082d85cd8;hpb=2eeea2f43d7bbaafd79ebd4185b42fc60646d9e3;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index b099c3b..d1d141d 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,28 +1,78 @@ - -
What's new ?
-Jalview Version 2.1
-The multiple sequence alignment program MAFFT - is available from the default Web Service list.
-The sequence feature retrieval system using DBFetch from EBI has been replaced - with DAS Feature fetching capabilities.
- -Export Annotations and Features
-GFF file reading / writing
-Associate structures with sequences from local PDB files
-Add sequences to existing alignment
-Recently opened files / URL lists
-Applet can launch the full application
-Applet has transparency for features (Java 1.2 required)
-Applet has user defined colours parameter
--
Issues Resolved
-Redundancy Panel reinstalled in the Applet
-Monospaced font - EPS / rescaling bug fixed
-Annotation files with sequence references bug fixed
--
See the Release History page for details of all - new features and resolved issues.
- - + + + ++ What's new in Jalview 2.10.1 ? +
++ Jalview 2.10.1 was released on 29th November 2016. Full details are + in the Jalview 2.10.1 + Release Notes, but the highlights are below. This is also the + first release to include contributions from Kira Mourão, who + joined Jalview's core development team in October 2016. +
+
+ Warning dialog about updating
+ your configured URL links
In the desktop prior to Jalview
+ 2.10.1, the only way to configure custom links for a particular
+ database cross-reference for a sequence was to give it a name that exactly
+ matched the database source, and a regular expression for filtering
+ out any spurious matches generated when the custom linked was tested
+ against the Sequence's ID string. Since the introduction of the
+ $DB_ACCESSION$ token, however, $SEQUENCE_ID$ will not be used for
+ database cross-reference accession strings, and if you have custom
+ links configured, Jalview will raise a warning message so let you
+ know that you may need to update your links to use $DB_ACCESSION$.
+