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What's new ?
-
- What's new ?
Jalview 2.8.1 includes a range of new features developed in the last 12 months.
As usual you can find the
- highlights below, and the comprehensive list is given in the Jalview 2.8.1 Release Notes.
-
- Internationalisation
-
- In August 2013, David Roldán-Martinez took on the task of
- internationalising Jalview's user interface. He also recruited Sara
- Hernández Díaz and Laura Ferrandis Martinez who created Jalview's
- first spanish user interface translation.
If you notice any
- problems, or would like to help translate Jalview's user interface
- into other languages, head over to issues.jalview.org
- and put in a feature request describing the translations you can
- provide to the i18n
- component. David has also documented the process of creating i18n translations to help you get started.
-
- Enhancements and new features
-
- Bug fixes
-
+
+ What's new in Jalview 2.10.4b1 ?
+
+ This is the first patch release for Jalview 2.10.4. It includes
+ the following new patches:
+
+ - HGVS nomenclature used for variant annotation retrieved
+ from Uniprot
+ - Uniprot import fails for some sequences (Cannot import
+ features with multiple variant elements)
+ - Clustal files with sequence positions in right-hand column
+ are now parsed correctly
+ - Wrap view - export to SVG - IDs shown but not alignment
+ area in exported graphic
+ - F2/Keyboard mode edits work when Overview window has input
+ focus
+ - Windows specific fixes:
+
+ - Annotation panel set too high when annotation added to
+ view
+ - Updated search paths for Chimera default installation
+ - Windows File Shortcuts can be dragged onto the Jalview
+ Desktop
+ - Drag URL from Chrome, Firefox, IE to Jalview desktop on
+ Windows doesn't open file:
Dragging the currently open
+ URL and links from a page viewed in Firefox or Chrome on
+ Windows is now fully supported.
+ If you are using Edge, only links in the page
+ can be dragged.
+ With Internet Explorer, only the currently open
+ URL in the browser can be dropped onto Jalview.
+
+
+
+
+ Highlights in the 2.10.4 series include:
+
+ - Numerous efficiency improvements in the renderer and overview when working with large alignments with lots of hidden columns
+ - Use of HTTPS when connecting to Uniprot, Ensembl and other EBI web services
+ - Critical patches for running Jalview on OSX with Java 10
+ - Easier adjustment of the Alignment ID panel and Annotation panel
+ - Improved support for mapping between 3D Structures and Uniprot Protein Sequences
+ - Improved support for discovering CDS and transcripts for Proteins and Ensembl gene IDs
+ - New buttons on the Structure Chooser for adding structures
+ to an existing view, and disabling automatic superposition
+ according to linked alignments
+ - Annotation transfer between Chimera and Jalview (formerly only
+ available in 'Experimental' mode)
+
+
+ The full list of bugs fixed in this release can be found in the 2.10.4
+ Release Notes.
+