X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fmarkdown%2Freleases%2Frelease-2_11_3_0.md;h=f3888cfc7922ed57bac68767dba27750af3537a7;hb=3cf308115d0ad959d36e81f5cc5e9254b69b79e6;hp=f7e7b8881fcce60910a79c25859837c066d10c39;hpb=b7ff4a5c3445124a594a8239327624deeb981a6b;p=jalview.git diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md index f7e7b88..f3888cf 100644 --- a/help/markdown/releases/release-2_11_3_0.md +++ b/help/markdown/releases/release-2_11_3_0.md @@ -60,6 +60,7 @@ channel: "release" - Reduce number of database crossreferences shown in tooltip - Drag and drop feature colours file on an alignment to quickly apply feature settings - Allow log level configuration via Jalview's Java Console, and a Copy to Clipboard button +- Upgrade bundled groovy to v4.0.15 and regularised interface for groovy scripts run from CLI, interactively and headlessly. ### Development and Deployment - Installers built with install4j10 @@ -92,6 +93,7 @@ channel: "release" - SLF4J produces an error to STDERR at Jalview startup due to missing class - macOS Dock and KDE taskbar names Jalview icon "java" when running - HeadlessException in console in headless mode (actually fixed in 2.11.{0,1,2)) +- Groovy console does not open when Jalview launched from jalview's Java 11 executable jar (available via conda) for recent versions of groovy ## New Known defects - EBI-AlphaFold PLDDT colours cannot be overlaid on alignment via 'Colour by annotation' unless the alignment's colourscheme has been set to 'None' via the Colours menu. @@ -103,7 +105,7 @@ channel: "release" - Last sequence ID in alignment not shown and annotation labels are misaligned in HTML export - Files opened via command line with a relative path are added as relative paths to Recent files list (since 2.0.x) - Test coverage for ID width adjustment disabled pending fix for new annotation label geometry and width calculation - +- scripts adding new fileformats or colourschemes do not work when run via command line