X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=log%2Flog4j.properties;h=d1868834ba2990da053a7a77e6bab968c92fb844;hb=cc4bc0878cb61dd358a8661070db715e1cae5702;hp=cd2a4067b594b6e1e42c7ffc359f8d596a6a0512;hpb=561c8c711c21527404b6bddb05d423aa3a1f6547;p=proteocache.git

diff --git a/log/log4j.properties b/log/log4j.properties
index cd2a406..d186883 100644
--- a/log/log4j.properties
+++ b/log/log4j.properties
@@ -1,9 +1,4 @@
-
-## CHANGE THIS (The root directory where to store all the log files)  
-#logDir = .
-
-## Uncomment to enable JWS2 activity logging to standard out (to the console if available)
-## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html 
+## Uncomment to enable ProteoCache activity logging
 ## Valid log levels are:
 ## TRACE - log everything from below including very detailed messages (useful for debugging only)
 ## DEBUG - log everything from below including some minor events (useful for debugging only)
@@ -25,6 +20,7 @@ org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE
 #log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n
 
 ## Uncomment to enable JWS2 activity logging to the file
+#logDir = .
 #log4j.logger.compbio=TRACE, ACTIVITY
 #log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender
 ################log4j.appender.ACTIVITY.File=${logDir}/activity.log
@@ -42,8 +38,6 @@ org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE
 #log4j.appender.C.layout.ConversionPattern=%m%n
 
 ##################################################################################################################################
-# log4j.properties from runner/
-
 #log4j.appender.stdout=org.apache.log4j.ConsoleAppender
 #log4j.appender.stdout.Target=System.out
 #log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
@@ -52,14 +46,14 @@ org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE
 
 log4j.rootLogger=ERROR, R
 log4j.appender.R=org.apache.log4j.FileAppender
-log4j.appender.R.File=${catalina.base}/logs/JABAWSErrorFile.log
+log4j.appender.R.File=${catalina.base}/logs/errors.log
 log4j.appender.R.layout=org.apache.log4j.PatternLayout
 log4j.appender.R.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - 
 
 # %d{ABSOLUTE} %5p %c{1}:%L -
-log4j.logger.compbio=WARN, B
+log4j.logger.compbio=DEBIG, B
 log4j.appender.B=org.apache.log4j.FileAppender
-log4j.appender.B.File=${catalina.base}/logs/engine.log
+log4j.appender.B.File=${catalina.base}/logs/debugging.log
 log4j.appender.B.layout=org.apache.log4j.PatternLayout
 log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - 
 
@@ -70,8 +64,3 @@ log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L)
 #log4j.appender.C.layout=org.apache.log4j.PatternLayout
 #log4j.appender.C.layout.ConversionPattern=%m%n
 # %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - 
-
-#log4j.logger.RunnerLogger=ERROR, D
-#log4j.appender.D=org.apache.log4j.ConsoleAppender 
-#log4j.appender.D.layout=org.apache.log4j.PatternLayout
-#log4j.appender.D.layout.ConversionPattern=%r [%t] %p %c %x - %m%n