X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;fp=resources%2Flang%2FMessages.properties;h=cabee76077e3ff570cac6211df2e401e10f4f67f;hb=b8810711642d8473325c8a3d3e76cc5c3c9b5bbd;hp=f23275af8ff655db8555f2cc80df7f4b03288b49;hpb=936d4dc095734df2b1e9f3bf9e0bd29b9c86434c;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index f23275a..cabee76 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -21,7 +21,7 @@ action.edit = Edit action.new = New action.open_file = Open file action.show_unconserved = Show Unconserved -action.open_new_aligmnent = Open new alignment +action.open_new_alignment = Open new alignment action.raise_associated_windows = Raise Associated Windows action.minimize_associated_windows = Minimize Associated Windows action.close_all = Close all @@ -102,11 +102,12 @@ action.find_all = Find all action.find_next = Find next action.file = File action.view = View +action.annotations = Annotations action.change_params = Change Parameters action.apply = Apply action.apply_threshold_all_groups = Apply threshold to all groups action.apply_all_groups = Apply to all Groups -action.by_chain = By chain +action.by_chain = By Chain action.by_sequence = By Sequence action.paste_annotations = Paste Annotations action.format = Format @@ -199,8 +200,10 @@ label.average_distance_bloslum62 = Average Distance Using BLOSUM62 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62 label.show_annotations = Show annotations label.hide_annotations = Hide annotations -label.show_all_annotations = Show all annotations -label.hide_all_annotations = Hide all annotations +label.show_all_seq_annotations = Show sequence related +label.hide_all_seq_annotations = Hide sequence related +label.show_all_al_annotations = Show alignment related +label.hide_all_al_annotations = Hide alignment related label.hide_all = Hide all label.add_reference_annotations = Add reference annotations label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).
Accepts regular expressions - search Help for 'regex' for details. @@ -238,6 +241,16 @@ label.show_consensus_logo = Show Consensus Logo label.norm_consensus_logo = Normalise Consensus Logo label.apply_all_groups = Apply to all groups label.autocalculated_annotation = Autocalculated Annotation +label.show_first = Show first +label.show_last = Show last +label.struct_from_pdb = Process secondary structure from PDB +label.use_rnaview = Use RNAView for secondary structure +label.autoadd_secstr = Add secondary structure annotation to alignment +label.autoadd_temp = Add Temperature Factor annotation to alignment +label.structure_viewer = Default structure viewer +label.chimera_path = Path to Chimera program +label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file. +label.invalid_chimera_path = Chimera path not found or not executable label.min_colour = Minimum Colour label.max_colour = Maximum Colour label.use_original_colours = Use Original Colours @@ -331,7 +344,7 @@ label.dont_ask_me_again = Don't ask me again label.select_eps_character_rendering_style = Select EPS character rendering style label.invert_selection = Invert Selection label.optimise_order = Optimise Order -label.seq_sort_by_score = Seq sort by Score +label.seq_sort_by_score = Sequence sort by Score label.load_colours = Load Colours label.save_colours = Save Colours label.fetch_das_features = Fetch DAS Features @@ -373,7 +386,7 @@ label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0} label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n label.align_to_existing_structure_view = Align to existing structure view -label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease try downloading them manually. +label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually. label.couldnt_load_file = Couldn't load file label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure. label.no_pdb_id_in_file = No PDB Id in File @@ -411,6 +424,7 @@ label.input_cut_paste = Cut & Paste Input label.input_cut_paste_params = Cut & Paste Input - {0} label.alignment_output_command = Alignment output - {0} label.annotations = Annotations +label.structure_options = Structure Options label.features = Features label.overview_params = Overview {0} label.paste_newick_file = Paste Newick file @@ -474,11 +488,18 @@ label.edit_sequence = Edit Sequence label.edit_sequences = Edit Sequences label.sequence_details = Sequence Details label.jmol_help = Jmol Help +label.chimera_help = Chimera Help +label.close_viewer = Close Viewer +label.confirm_close_chimera = This will close Jalview''s connection to {0}.
Do you want to close the Chimera window as well? +label.chimera_help = Chimera Help label.all = All -label.sort_by = Sort by +label.sort_by = Sort alignment by label.sort_by_score = Sort by Score label.sort_by_density = Sort by Density label.sequence_sort_by_density = Sequence sort by Density +label.sort_ann_by = Sort annotations by +label.sort_annotations_by_sequence = Sort by sequence +label.sort_annotations_by_label = Sort by label label.reveal = Reveal label.hide_columns = Hide Columns label.load_jalview_annotations = Load Jalview Annotations or Features File @@ -498,7 +519,7 @@ label.toggle_absolute_relative_display_threshold = Toggle between absolute and r label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features) label.select_colour_minimum_value = Select Colour for Minimum Value label.select_colour_maximum_value = Select Colour for Maximum Value -label.open_new_jmol_view_with_all_structures_associated_current_selection_superimpose_using_alignment = Open a new Jmol view with all structures associated with the current selection and superimpose them using the alignment. +label.open_new_jmol_view_with_all_structures_associated_current_selection_superimpose_using_alignment = Open a new structure viewer with all structures associated with the current selection and superimpose them using the alignment. label.open_url_param = Open URL {0} label.open_url_seqs_param = Open URL ({0}..) ({1} seqs) label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0} @@ -573,7 +594,7 @@ label.figure_id_column_width = Figure ID column width label.use_modeller_output = Use Modeller Output label.wrap_alignment = Wrap Alignment label.right_align_ids = Right Align Ids -label.sequence_name_italics = Sequence Name Italics +label.sequence_name_italics = Seq Name Italics label.open_overview = Open Overview label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment label.annotation_shading_default = Annotation Shading Default @@ -587,6 +608,7 @@ label.das_settings = DAS Settings label.web_services = Web Services label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter. label.let_jmol_manage_structure_colours = Let Jmol manage structure colours +label.let_chimera_manage_structure_colours = Let Chimera manage structure colours label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence label.index_web_services_menu_by_host_site = Index web services in menu by the host site label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed
when a web service URL cannot be accessed by Jalview
when it starts up @@ -635,7 +657,7 @@ label.edit_name_and_description_current_group = Edit name and description of cur label.view_structure_for = View structure for {0} label.view_all_structures = View all {0} structures. label.view_all_representative_structures = View all {0} representative structures. -label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new Jmol view with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment. +label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new structure viewer with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment. label.associate_structure_with_sequence = Associate Structure with Sequence label.from_file = from file label.enter_pdb_id = Enter PDB Id @@ -681,8 +703,10 @@ label.jalview_pca_calculation = Jalview PCA Calculation label.link_name = Link Name label.pdb_file = PDB file label.colour_with_jmol = Colour with Jmol +label.colour_with_chimera = Colour with Chimera label.align_structures = Align structures label.jmol = Jmol +label.chimera = Chimera label.sort_alignment_by_tree = Sort Alignment By Tree label.mark_unlinked_leaves = Mark Unlinked Leaves label.associate_leaves_with = Associate Leaves With @@ -754,7 +778,9 @@ label.services_at = Services at {0} label.rest_client_submit = {0} using {1} label.fetch_retrieve_from =Retrieve from {0} label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}
First is :{2} -label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
+#label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
+label.feature_settings_click_drag = Drag up or down to change render order.
Double click to select columns containing feature. +label.transparency_tip = Adjust transparency to 'see through' feature colours. label.opt_and_params_further_details = see further details by right-clicking label.opt_and_params_show_brief_desc_image_link = Click to show brief description
Right click for further information. label.opt_and_params_show_brief_desc = Click to show brief description
@@ -822,7 +848,7 @@ label.service_url = Service URL label.copied_sequences = Copied sequences label.cut_sequences = Cut Sequences label.conservation_colour_increment = Conservation Colour Increment ({0}) -label.percentage_identity_thereshold = Percentage Identity Thereshold ({0}) +label.percentage_identity_thereshold = Percentage Identity Threshold ({0}) label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog label.save_alignment_to_file = Save Alignment to file label.save_features_to_file = Save Features to File @@ -1127,7 +1153,7 @@ label.edit_jabaws_url = Edit JABAWS URL label.add_jabaws_url = Add new JABAWS URL label.news_from_jalview = News from http://www.jalview.org label.cut_paste_alignmen_file = Cut & Paste Alignment File -label.enter_redundancy_thereshold = Enter the redundancy thereshold +label.enter_redundancy_thereshold = Enter the redundancy threshold label.select_dark_light_set_thereshold = Select a dark and light text colour, then set the threshold to
switch between colours, based on background colour label.select_feature_colour = Select Feature Colour label.delete_all = Delete all sequences