X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=30fbb86dc7de70c2ea79c01477f19d4a0acce013;hb=8956fdfd008d0d949814c4680a7b3a55969e39e1;hp=fe744767fff15be8f17cb5336b1a038257e730e2;hpb=b5a209613f14ad6e75f43aa537a96484d847ce0a;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index fe74476..30fbb86 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -30,6 +30,7 @@ action.minimize_associated_windows = Minimize Associated Windows
 action.close_all = Close all
 action.load_project = Load Project
 action.save_project = Save Project
+action.save_project_as = Save Project as...
 action.quit = Quit
 action.expand_views = Expand Views
 action.gather_views = Gather Views
@@ -172,10 +173,9 @@ label.principal_component_analysis = Principal Component Analysis
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
 label.choose_calculation = Choose Calculation
-label.treecalc_title = {0} Using {1}
+label.calc_title = {0} Using {1}
 label.tree_calc_av = Average Distance
 label.tree_calc_nj = Neighbour Joining
-label.select_score_model = Select score model
 label.score_model_pid = % Identity
 label.score_model_blosum62 = BLOSUM62
 label.score_model_pam250 = PAM 250
@@ -242,7 +242,6 @@ label.documentation = Documentation
 label.about = About...
 label.show_sequence_limits = Show Sequence Limits
 action.feature_settings = Feature Settings...
-label.feature_settings = Feature Settings
 label.all_columns = All Columns
 label.all_sequences = All Sequences
 label.selected_columns = Selected Columns 
@@ -267,6 +266,7 @@ label.use_rnaview = Use RNAView for secondary structure
 label.autoadd_secstr = Add secondary structure annotation to alignment
 label.autoadd_temp = Add Temperature Factor annotation to alignment
 label.structure_viewer = Default structure viewer
+label.double_click_to_browse = Double-click to browse for file
 label.chimera_path = Path to Chimera program
 label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
 label.invalid_chimera_path = Chimera path not found or not executable
@@ -274,6 +274,7 @@ label.chimera_missing = Chimera structure viewer not found.<br/>Please enter the
 label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure
 label.min_colour = Minimum Colour
 label.max_colour = Maximum Colour
+label.no_colour = No Colour
 label.use_original_colours = Use Original Colours
 label.threshold_minmax = Threshold is min/max
 label.represent_group_with = Represent Group with {0}
@@ -281,9 +282,9 @@ label.selection = Selection
 label.group_colour = Group Colour
 label.sequence = Sequence
 label.view_pdb_structure = View PDB Structure
-label.min = Min:
-label.max = Max:
-label.colour_by_label = Colour by label
+label.min_value = Min value
+label.max_value = Max value
+label.no_value = No value
 label.new_feature = New Feature
 label.match_case = Match Case
 label.view_alignment_editor = View in alignment editor
@@ -368,6 +369,8 @@ label.optimise_order = Optimise Order
 label.seq_sort_by_score = Sequence sort by Score
 label.load_colours = Load Colours
 label.save_colours = Save Colours
+label.load_colours_tooltip = Load feature colours and filters from file
+label.save_colours_tooltip = Save feature colours and filters to file
 label.fetch_das_features = Fetch DAS Features
 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} 
 label.database_param = Database: {0}
@@ -400,10 +403,6 @@ label.view_name_original = Original
 label.enter_view_name = Enter View Name
 label.enter_label = Enter label
 label.enter_label_for_the_structure = Enter a label for the structure
-label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to re-use this viewer ?
-label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0}
-label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n
-label.align_to_existing_structure_view = Align to existing structure view
 label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually.
 label.couldnt_load_file = Couldn't load file
 label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.
@@ -417,7 +416,7 @@ label.input_alignment_from_url = Input Alignment From URL
 label.input_alignment = Input Alignment
 label.couldnt_import_as_vamsas_session = Couldn't import {0} as a new vamsas session.
 label.vamsas_document_import_failed = Vamsas Document Import Failed
-label.couldnt_locate = Couldn't locate {0}
+label.couldnt_locate = Could not locate {0}
 label.url_not_found = URL not found
 label.new_sequence_url_link = New sequence URL link
 label.cannot_edit_annotations_in_wrapped_view = Cannot edit annotations in wrapped view
@@ -490,6 +489,10 @@ label.settings_for_type = Settings for {0}
 label.view_full_application = View in Full Application
 label.load_associated_tree = Load Associated Tree...
 label.load_features_annotations = Load Features/Annotations...
+label.load_vcf = Load SNP variants from plain text or indexed VCF data
+label.load_vcf_file = Load VCF File
+label.searching_vcf = Loading VCF variants...
+label.added_vcf = Added {0} VCF variants to {1} sequence(s)
 label.export_features = Export Features...
 label.export_annotations = Export Annotations...
 label.to_upper_case = To Upper Case
@@ -499,6 +502,10 @@ label.edit_name_description = Edit Name/Description...
 label.create_sequence_feature = Create Sequence Feature...
 label.edit_sequence = Edit Sequence
 label.edit_sequences = Edit Sequences
+label.insert_gap = Insert 1 gap
+label.insert_gaps = Insert {0} gaps
+label.delete_gap = Delete 1 gap
+label.delete_gaps = Delete {0} gaps
 label.sequence_details = Sequence Details
 label.jmol_help = Jmol Help
 label.chimera_help = Chimera Help
@@ -528,7 +535,6 @@ label.threshold_feature_above_threshold = Above Threshold
 label.threshold_feature_below_threshold = Below Threshold
 label.adjust_threshold = Adjust threshold
 label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold.
-label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features)
 label.select_colour_minimum_value = Select Colour for Minimum Value
 label.select_colour_maximum_value = Select Colour for Maximum Value
 label.open_url_param = Open URL {0}
@@ -673,7 +679,8 @@ label.2d_rna_structure_line = 2D RNA {0} (alignment)
 label.2d_rna_sequence_name = 2D RNA - {0}
 label.edit_name_and_description_current_group = Edit name and description of current group
 label.from_file = From File
-label.enter_pdb_id = Enter PDB Id (or pdbid:chaincode)
+label.enter_pdb_id = Enter PDB Id
+label.enter_pdb_id_tip = Enter PDB Id (or pdbid:chaincode)
 label.text_colour = Text Colour...
 label.structure = Structure
 label.show_pdbstruct_dialog = 3D Structure Data...
@@ -768,7 +775,7 @@ label.run_with_preset_params = Run {0} with preset
 label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation
 label.view_documentation = View documentation
 label.select_return_type = Select return type
-label.translation_of_params = Translation of {0}
+label.translation_of_params = Translation of {0} (Table {1})
 label.features_for_params = Features for - {0}
 label.annotations_for_params = Annotations for - {0}
 label.generating_features_for_params = Generating features for - {0}
@@ -779,7 +786,7 @@ label.pairwise_aligned_sequences = Pairwise Aligned Sequences
 label.original_data_for_params = Original Data for {0}
 label.points_for_params = Points for {0}
 label.transformed_points_for_params = Transformed points for {0}
-label.graduated_color_for_params = Graduated Feature Colour for {0}
+label.variable_color_for = Variable Feature Colour for {0}
 label.select_background_colour = Select Background Colour
 label.invalid_font = Invalid Font
 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
@@ -866,7 +873,7 @@ label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0}
 label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\!
 label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown
 label.feature_type = Feature Type
-label.display = Display
+label.show = Show
 label.service_url = Service URL
 label.copied_sequences = Copied sequences
 label.cut_sequences = Cut Sequences
@@ -876,7 +883,6 @@ label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User C
 label.save_alignment_to_file = Save Alignment to file
 label.save_features_to_file = Save Features to File
 label.save_annotation_to_file = Save Annotation to File
-label.no_features_on_alignment = No features found on alignment
 label.save_pdb_file = Save PDB File
 label.save_text_to_file = Save Text to File
 label.save_state = Save State
@@ -1212,7 +1218,6 @@ label.pdb_sequence_fetcher = PDB Sequence Fetcher
 label.result = result
 label.results = results
 label.structure_chooser = Structure Chooser
-label.select = Select : 
 label.invert = Invert 
 label.select_pdb_file = Select PDB File
 info.select_filter_option = Select Filter Option/Manual Entry
@@ -1282,7 +1287,6 @@ label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Conne
 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
 label.do_not_display_again = Do not display this message again
 exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
-label.filter = Filter text:
 action.customfilter = Custom only
 action.showall = Show All
 label.insert = Insert:
@@ -1295,7 +1299,6 @@ label.database = Database
 label.urltooltip = Only one url, which must use a sequence id, can be selected for the 'On Click' option
 label.edit_sequence_url_link = Edit sequence URL link
 warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids
-label.invalid_name = Invalid Name !
 label.output_seq_details = Output Sequence Details to list all database references
 label.urllinks = Links
 label.default_cache_size = Default Cache Size
@@ -1320,3 +1323,100 @@ label.select_hidden_colour = Select hidden colour
 label.overview = Overview
 label.reset_to_defaults = Reset to defaults
 label.oview_calc = Recalculating overview...
+label.feature_details = Feature details
+label.matchCondition_contains = Contains
+label.matchCondition_notcontains = Does not contain
+label.matchCondition_matches = Matches
+label.matchCondition_notmatches = Does not match
+label.matchCondition_present = Is present
+label.matchCondition_notpresent = Is not present
+label.matchCondition_eq = =
+label.matchCondition_ne = not =
+label.matchCondition_lt = <
+label.matchCondition_le = <=
+label.matchCondition_gt = >
+label.matchCondition_ge = >=
+label.numeric_required = The value should be numeric
+label.filter = Filter
+label.filters = Filters
+label.join_conditions = Join conditions with
+label.score = Score
+label.colour_by_label = Colour by label
+label.variable_colour = Variable colour...
+label.select_colour = Select colour
+option.enable_disable_autosearch = When ticked, search is performed automatically
+option.autosearch = Autosearch
+label.retrieve_ids = Retrieve IDs
+label.display_settings_for = Display settings for {0} features
+label.simple = Simple
+label.simple_colour = Simple Colour
+label.colour_by_text = Colour by text
+label.graduated_colour = Graduated Colour
+label.by_text_of = By text of
+label.by_range_of = By range of
+label.or = Or
+label.and = And
+label.sequence_feature_colours = Sequence Feature Colours
+label.best_quality = Best Quality
+label.best_resolution = Best Resolution
+label.most_protein_chain = Most Protein Chain
+label.most_bound_molecules = Most Bound Molecules
+label.most_polymer_residues = Most Polymer Residues
+label.cached_structures = Cached Structures
+label.free_text_search = Free Text Search
+label.backupfiles_confirm_delete = Confirm delete
+label.backupfiles_confirm_delete_old_files = Delete the following older backup files? (see the Backups tab in Preferences for more options)
+label.backupfiles_confirm_save_file = Confirm save file
+label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file.
+label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
+label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
+label.backups = Backups
+label.backup = Backup
+label.backup_files = Backup Files
+label.enable_backupfiles = Enable backup files
+label.backup_filename_strategy = Backup filename strategy
+label.append_to_filename = Append to filename (%n is replaced by the backup number)
+label.append_to_filename_tooltip = %n in the text will be replaced by the backup number. The text will appear after the filename. See the summary box above.
+label.index_digits = Number of digits to use for the backup number (%n)
+label.summary_of_backups_scheme = Summary of backup scheme
+label.increment_index = Increase appended text numbers - newest file has largest number.
+label.reverse_roll = "Roll" appended text numbers - newest backup file is always number 1.
+label.keep_files = Deleting old backup files
+label.keep_all_backup_files = Do not delete old backup files
+label.keep_only_this_number_of_backup_files = Keep only this number of most recent backup files
+label.autodelete_old_backup_files = Autodelete old backup files:
+label.always_ask = Always ask
+label.auto_delete = Automatically delete
+label.filename = filename
+label.braced_oldest = (oldest)
+label.braced_newest = (most recent)
+label.configuration = Configuration
+label.configure_feature_tooltip = Click to configure variable colour or filters
+label.schemes = Schemes
+label.customise = Customise
+label.default = Default
+label.single_file = Single backup
+label.keep_all_versions = Keep all versions
+label.rolled_backups = Rolled backup files
+label.previously_saved_scheme = Previously saved scheme
+label.no_backup_files = NO BACKUP FILES
+label.include_backup_files = Include backup files
+label.cancel_changes = Cancel changes
+label.warning_confirm_change_reverse = Warning!\nIf you change the increment/decrement of the backup filename number, without changing the suffix or number of digits,\nthis may cause loss of backup files created with the previous backup filename scheme.\nAre you sure you wish to do this?
+label.change_increment_decrement = Change increment/decrement?
+label.was_previous = was {0}
+label.newerdelete_replacement_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted and replaced by apparently older file\n''{1}''\t(modified {3}, size {5}).
+label.confirm_deletion_or_rename = Confirm deletion of ''{0}'' or rename to ''{1}''?
+label.newerdelete_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted but is newer than the oldest remaining backup file\n''{1}''\t(modified {3}, size {5}).
+label.confirm_deletion = Confirm deletion of ''{0}''?
+label.delete = Delete
+label.rename = Rename
+label.keep = Keep
+label.file_info = (modified {0}, size {1})
+label.annotation_name = Annotation Name
+label.annotation_description = Annotation Description 
+label.edit_annotation_name_description = Edit Annotation Name/Description
+label.alignment = alignment
+label.pca = PCA
+label.create_image_of = Create {0} image of {1}
+label.click_to_edit = Click to edit, right-click for menu